Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_C19
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...   156   4e-39
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   8.0  

>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score =  156 bits (378), Expect = 4e-39
 Identities = 72/121 (59%), Positives = 87/121 (71%)
 Frame = +2

Query: 485 KKLYLLQXATESNNISVKGVGRFYAPRKKHVITTQIEHKCVLDSCRALXGEGFXITYLPV 664
           +++     ATESNN  +KGV RFY  RKKH+++ Q EHKCVLDS RAL  EGF +T+LPV
Sbjct: 161 REIIFTSGATESNNAILKGVARFYKSRKKHLVSVQTEHKCVLDSLRALQEEGFEVTFLPV 220

Query: 665 QQNGIINLKDLEDAITPETXLVSIMTVNNEIXVXXPIEXIGXICXXXKXFFHTDAAQXVG 844
           Q NG+INL +L DAI P+T  VS+M VNNEI V  P+E IG IC   K FFH+DAAQ  G
Sbjct: 221 QTNGLINLDELRDAIRPDTVCVSVMAVNNEIGVCQPLEEIGKICRQKKVFFHSDAAQGYG 280

Query: 845 K 847
           K
Sbjct: 281 K 281



 Score =  108 bits (259), Expect = 1e-24
 Identities = 45/68 (66%), Positives = 58/68 (85%)
 Frame = +1

Query: 301 PLYFDAQATTPMDPRVLDVMLPYLVSYHGNPHSRTHAYGWESEAAVEKAREQVANLINAE 480
           P+Y D QAT+P+D RVLD MLP+    +GNPHSRTHAYGWE+E AVE AR+++A++INA+
Sbjct: 100 PIYMDFQATSPLDYRVLDSMLPFFTGIYGNPHSRTHAYGWEAEKAVENARQEIASVINAD 159

Query: 481 PKEIIFTS 504
           P+EIIFTS
Sbjct: 160 PREIIFTS 167


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 331 PMDPRVLDVMLPYLVSYHGNPHSRTHAYGWESEAA-VEKAREQVANLINAEPKEIIFTSX 507
           P+D   + V+ PYL +  G   S+T+A     E + ++K++E  ++       E I  S 
Sbjct: 161 PLDANNVFVIPPYLTAMKGFEKSQTNATASVPEPSFLKKSKESSSSSNKFSVSESIANSY 220

Query: 508 SN 513
           SN
Sbjct: 221 SN 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,561
Number of Sequences: 5004
Number of extensions: 57066
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)