Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_C18
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              28   0.13 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   5.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   5.0  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   6.6  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +1

Query: 802 MATXXXSTXLXXSXXLPDGQVXPIG 876
           MAT   S+ L  S  LPDGQV  IG
Sbjct: 2   MATAASSSSLEKSYELPDGQVITIG 26


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 408 DTQLIVEGVVPDLLHVI 358
           + Q +V+ V PD+LH+I
Sbjct: 21  NNQTVVDKVPPDMLHLI 37


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/40 (25%), Positives = 15/40 (37%)
 Frame = -3

Query: 859 DRQEVXXXXRGRWXRXRWPXPXXSRGRHSRXSP*CHERFP 740
           D+ E+    R  +    W        RH +  P C E +P
Sbjct: 184 DKVEIGIDLREYYPSVEWDILGVPAERHKKYYPCCDEPYP 223


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 118 ILNFVCVCVGDAGIDSTAARLRVKI 44
           I++ +CVCVG   ++     LR  I
Sbjct: 6   IISAICVCVGALTLEELQIGLRAVI 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,915
Number of Sequences: 438
Number of extensions: 4035
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)