Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_C17
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 29 0.91
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 28 1.6
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 28 2.1
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.7
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 3.7
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 27 3.7
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 4.9
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 26 8.5
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 8.5
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 8.5
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 29.1 bits (62), Expect = 0.91
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 535 VSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNG 645
+ +K I L++NN+ KILN R V+ VGT NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +1
Query: 208 VVADYDSAVE--KSKH--LYEEKKXEVITNVVNKLIRNNKMNCMEYAYQLW 348
V D +S E K KH + + +K + ++ K+++ NK+N +E A Q W
Sbjct: 119 VEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 459 TLSNDVQGRRWQTCLRRRQGQDK-PESQLEVNRSVGEQQGLLQ 584
T+ D GRR L R++ + K E + E R +QQG++Q
Sbjct: 155 TVYRDATGRRIDLVLARKEAKRKLKEKEEEARRQKEQQQGVVQ 197
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 437 VHKLNRVFGEDKSELNWETIPDDV 366
+H + EDKS+L +ETIPD V
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPDPV 32
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 262 KKXEVITNVVNKLIRNNKMNCMEYAYQLWLQGL 360
K+ +T+ NKL+ ++ + +YAY L LQ L
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQQL 67
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 520 KTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGTN 636
K SP+V+WK +W + K K +++ +LG G++
Sbjct: 28 KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 382 VSQLSSDLSSPKTRLSLCTSATV 450
VS L +DL + KT+LS SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.8 bits (54), Expect = 8.5
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 256 EEKKXEVITNVVNKLIRNNKMNCMEYAYQLWLQGLQGTSSGIVSQLSSD--LSSPKTRLS 429
E ++ VI + + L+++ MNC +YA Q W+ G+ I+S +S + S+ + R
Sbjct: 1111 EMERDAVIGHGTSFLMQDRLMNCSDYA-QSWVCRDCGSIISIMSTISMNGVGSASEVRCR 1169
Query: 430 LCTSATVSL 456
C + L
Sbjct: 1170 SCAKPALGL 1178
>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.8 bits (54), Expect = 8.5
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +1
Query: 196 YNSVVVADYDSAVEKSKHLYEEKKXEVITNVVNKLIRNNK--MNCMEYAYQLWLQGLQGT 369
+N Y + + + +Y+ EVI V+ +L N + E YQ +++GL
Sbjct: 71 FNDTFSPKYSTRLSSAGLIYKHFGREVIHAVLPQLKINEQDLETLYEKVYQSFVEGLDAN 130
Query: 370 SSGIVSQLSSDLSSPKTRLSL 432
+GI + + S K +SL
Sbjct: 131 DNGISAYPAGLKPSFKAAMSL 151
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 190 QLYNSVVVADYDSAVEKSKHLYEEKK 267
QL N DY+ E++K LY+E+K
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERK 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,133
Number of Sequences: 5004
Number of extensions: 55634
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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