Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_C17
         (908 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0444 + 3141018-3141503,3141967-3142066,3142940-3142980           32   0.72 
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643...    29   6.7  

>06_01_0444 + 3141018-3141503,3141967-3142066,3142940-3142980
          Length = 208

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
 Frame = +1

Query: 484 DDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVL-GVGTNWNGDHMAF 660
           DD R      +D+ S   +W +  L  N      + +    +YL       +WN + +  
Sbjct: 24  DDDRSGVSLQQDRASVHAAWAVHILHFNGGDVLMLHSAANGRYLAAYRAEGSWNVERL-- 81

Query: 661 GVNSVDSFRAQWYLQPAKYDNDVLFYIYNREYSKALTLXEDXLS 792
            +N + S    WY   ++Y +DVL   +   +        D +S
Sbjct: 82  NLNRLPSLTFSWYALGSRYGDDVLLRHFKSMFFLRALFRRDRIS 125


>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
            34664499-34664647,34664784-34664879,34665406-34665476,
            34665637-34665698,34665778-34665841,34665950-34666034,
            34666129-34666255,34666381-34666454,34666539-34666599,
            34666683-34666771,34666897-34667206,34667763-34667815,
            34668299-34668370,34668648-34668914,34669015-34669047,
            34669163-34669245,34669522-34669594,34669834-34670170,
            34670302-34670633,34670816-34671135,34671261-34671612,
            34671691-34671906
          Length = 1170

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 23/139 (16%)
 Frame = +1

Query: 79   TQDLDAPKXKPAIVILCLFVASLYAAXSDVPNDILEXQLY------NSV-VVADYDSAVE 237
            T  LD P  + A ++L  F   L++  S  P  IL    +      NS   V D   A E
Sbjct: 643  TLTLDCPLFRNARIVLDDFEVILHSPDSIAPVGILHPLKFHLEHKPNSFGTVGDSAIAQE 702

Query: 238  KSKHLYE----------EKKXEVITNVVNKLIRNNKMNCME------YAYQLWLQGLQGT 369
             S +LYE          EKK E ++ V       N   C+       ++   W+Q   GT
Sbjct: 703  NSSYLYEVDGAIAHSDVEKKQETLSPVTTVDACTNIDLCISKTGKKLFSIGCWIQDPCGT 762

Query: 370  SSGIVSQLSSDLSSPKTRL 426
            S G+ + L + LS  + +L
Sbjct: 763  SEGLKTDLVAVLSRIENQL 781


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,472,667
Number of Sequences: 37544
Number of extensions: 383128
Number of successful extensions: 953
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)