Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_C12
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.6  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    28   2.1  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 142 VTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQTA 321
           +T  +TLT +    FKV S P +T     L+  ++EF    A S  +   GI +  +Q  
Sbjct: 636 LTVYVTLTLEGVPDFKVYSNPISTDLPLTLQSPSDEFSTIYAWSDYLYIVGIDMETEQPT 695

Query: 322 GNVFLK 339
            N  L+
Sbjct: 696 LNQILE 701


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -1

Query: 254 LNSSAANFNTAVNGVASGTLSTLNGSFGSDVSVILKVTFDILNYTQNLKIYVQFRFPNLL 75
           +NS  ANF     G ++  +  LN  F S+ ++ L     I  YT     +++ R  NL+
Sbjct: 219 INSFFANFIEESAGYSNSLIEKLNEKFTSENAIALSA---IGKYTSEFSAFMEKRIKNLI 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,778
Number of Sequences: 5004
Number of extensions: 44121
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)