Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_C12
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-8|AAA28214.1|   94|Caenorhabditis elegans Hypothetical pr...   153   1e-37
AF303260-1|AAG50218.1|   94|Caenorhabditis elegans 3H949 protein.     153   1e-37
U41508-3|AAN39664.1|  317|Caenorhabditis elegans Set (trithorax/...    30   2.6  
AL132948-18|CAD31819.1|  390|Caenorhabditis elegans Hypothetical...    29   4.6  
AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical ...    29   6.1  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    28   8.0  

>L14429-8|AAA28214.1|   94|Caenorhabditis elegans Hypothetical
           protein ZK652.3 protein.
          Length = 94

 Score =  153 bits (372), Expect = 1e-37
 Identities = 72/82 (87%), Positives = 78/82 (95%)
 Frame = +1

Query: 136 SKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQ 315
           SKVTFKITLTSDPKLPFKVLSVPE+TPFTAVLKFAAEEF+V  ATSAIIT+DG+G+NP Q
Sbjct: 12  SKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGVNPAQ 71

Query: 316 TAGNVFLKHGSELRLIPRDRVG 381
            AGN+FLKHGSELRLIPRDRVG
Sbjct: 72  PAGNIFLKHGSELRLIPRDRVG 93


>AF303260-1|AAG50218.1|   94|Caenorhabditis elegans 3H949 protein.
          Length = 94

 Score =  153 bits (372), Expect = 1e-37
 Identities = 72/82 (87%), Positives = 78/82 (95%)
 Frame = +1

Query: 136 SKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQ 315
           SKVTFKITLTSDPKLPFKVLSVPE+TPFTAVLKFAAEEF+V  ATSAIIT+DG+G+NP Q
Sbjct: 12  SKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGVNPAQ 71

Query: 316 TAGNVFLKHGSELRLIPRDRVG 381
            AGN+FLKHGSELRLIPRDRVG
Sbjct: 72  PAGNIFLKHGSELRLIPRDRVG 93


>U41508-3|AAN39664.1|  317|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 20,
           isoform a protein.
          Length = 317

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 189 FKRQFRIRCECNLESYFRHFKLYTKFKNLCSISFPK 82
           ++ Q R+  E   E   ++FK   K +  C+ISFP+
Sbjct: 49  YRMQLRVNAEIEQEEEVQNFKKCCKCRGKCAISFPE 84


>AL132948-18|CAD31819.1|  390|Caenorhabditis elegans Hypothetical
           protein Y39B6A.22 protein.
          Length = 390

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 274 AIITDDGIGINPQQTAGNVFLKHGSELRLIPRDRVGFSL 390
           A+ TD   G  P    GNVFL+    +  +   R+GF++
Sbjct: 347 AMFTDSSTGFGPSFGFGNVFLRQYCNIFDVGNARIGFAI 385


>AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical
           protein Y59A8B.6 protein.
          Length = 968

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 305 FMPIPSSVIIALVAGSTLNSSAANFNTAVNGVASGTLSTLNGSFGS 168
           F P+P S+I   +    ++ S  + N      ASG +STL G  G+
Sbjct: 192 FTPVPDSIIAMNMNYGQMSHSIDSGNGLTTPFASGFMSTLGGGGGA 237


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
           protein W05F2.7 protein.
          Length = 1424

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 133 MSKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEF 252
           ++K T K+ L++ P+    VL  P    FT ++KF  EEF
Sbjct: 132 ITKKTTKLHLSASPQTGHAVLPYP----FTGIIKFQTEEF 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,535,866
Number of Sequences: 27780
Number of extensions: 267522
Number of successful extensions: 671
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)