Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_C12
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   6.7  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   8.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   8.9  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 475 LHQNNTYKIYTNYSA*YN 422
           +H NN Y  Y N    YN
Sbjct: 312 IHNNNNYNNYNNKKLYYN 329


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 466 NNTYKIYTNYSA*YNGMI*HIY 401
           NN Y  Y NY+  YN     +Y
Sbjct: 331 NNNYNNYNNYNNNYNNNYKKLY 352


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 153 LESYFRHFKLYTK 115
           ++SY  H KLYTK
Sbjct: 343 VDSYGNHVKLYTK 355


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 153 LESYFRHFKLYTK 115
           ++SY  H KLYTK
Sbjct: 343 VDSYGNHVKLYTK 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,120
Number of Sequences: 438
Number of extensions: 3722
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)