Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_C11
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   6.4  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   8.4  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -3

Query: 409 GSRNTTYSLPCTSHACSH-RFRLHGSIDFGIHRPATCWCVSQQCSLTHCTSASPTRH-VC 236
           G +  T S+    H C       +  +DFG   PA+  C     SL H    SPT+H + 
Sbjct: 524 GRQPITSSIGWQKHGCYQIGTTQYTDLDFG---PASEACRDDWNSLDHLDPTSPTKHYIA 580

Query: 235 RDRNTRS 215
           R    RS
Sbjct: 581 RMNEIRS 587


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 152 EEPHLTDTIDVIDSSHSAMPD 214
           EEPH   TI V D++ S  PD
Sbjct: 783 EEPHFVSTIRVSDNTSSDNPD 803


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,330
Number of Sequences: 5004
Number of extensions: 63699
Number of successful extensions: 181
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)