Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_C10
         (953 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.32 

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 19/61 (31%), Positives = 22/61 (36%)
 Frame = +1

Query: 505  GXPPLXGGQTGXPXPGENXGKPPXPXGXXKAPNGHXAPXXAPFPXXXPPRXXTHPKXLPX 684
            G PP+    T  P P  + G PP P    KAP         P P    P   T    +P 
Sbjct: 1206 GVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP-------PVPAPSSEAPSVSTPRSSVPS 1258

Query: 685  P 687
            P
Sbjct: 1259 P 1259



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 21/79 (26%), Positives = 25/79 (31%), Gaps = 5/79 (6%)
 Frame = +1

Query: 478  GPGXAXAGSGXPPLXGGQTGXPX-PGENXGKPPXPX--GXXKAPNGHXAPXXAPFPXXXP 648
            G     A SG PP+       P  P  +   PP P   G    P    A    P P   P
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140

Query: 649  --PRXXTHPKXLPXPXXTP 699
              P+       +P P   P
Sbjct: 1141 PVPKPSVAAPPVPAPSGAP 1159



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 18/68 (26%), Positives = 22/68 (32%)
 Frame = +1

Query: 496  AGSGXPPLXGGQTGXPXPGENXGKPPXPXGXXKAPNGHXAPXXAPFPXXXPPRXXTHPKX 675
            A SG PP+       P P  +   PP P      P     P  AP      P+       
Sbjct: 1078 APSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP-----PVPAPSGAPPVPKPSVAAPP 1132

Query: 676  LPXPXXTP 699
            +P P   P
Sbjct: 1133 VPVPSGAP 1140



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 14/49 (28%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
 Frame = +1

Query: 511  PPLXGGQTGXPXPGENXGKPPXPX--GXXKAPNGHXAPXXAPFPXXXPP 651
            PP+       P P  +   PP P   G    P    A    P P   PP
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.146    0.512 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,352,930
Number of Sequences: 5004
Number of extensions: 13749
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)