Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_C08
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 79 6e-16
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 69 7e-13
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 52 8e-08
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 50 4e-07
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 38 0.002
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 28 2.0
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 3.5
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 26 6.1
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 79.4 bits (187), Expect = 6e-16
Identities = 53/164 (32%), Positives = 73/164 (44%), Gaps = 2/164 (1%)
Frame = +3
Query: 279 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 458
GLFINN+ V S G K +P+ ++I EV F+ +PWR
Sbjct: 24 GLFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFS 83
Query: 459 ASERGALINKLADLIERDXTYLASLXTLDNGKPYKDSYFGDXXASXXNLXVLRRVGRPHP 638
+++RG +++LAD IE++ YLAS+ TLDNGK + GD A+ R G
Sbjct: 84 SAQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLAR-GDVQAA---ADCFRYYGGWAD 139
Query: 639 RXCSARRXXXXXXXXXXSH--WXVCGHIIPWNXPIXXAAXKLRP 764
+ H VCG IIPWN P A K+ P
Sbjct: 140 KDYGQTIETDIKRFAYTRHEPIGVCGQIIPWNFPFLMCAWKIAP 183
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 69.3 bits (162), Expect = 7e-13
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 2/166 (1%)
Frame = +3
Query: 279 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 458
GL+IN EW KS++ T++T +P+ +VIA+V FK W+ +
Sbjct: 22 GLYINGEWHKSAE--TWETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKT---WKKVP 76
Query: 459 ASERGALINKLADLIERDXTYLASLXTLDNGKPYKDSYFGDXXASXXNLXVLRRVGRPHP 638
SE+G L+ KLA+L E+ LA++ +D+GKP + GD + + +LR
Sbjct: 77 GSEKGELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGT---IALLRYCAGWAD 133
Query: 639 RXCS--ARRXXXXXXXXXXSHWXVCGHIIPWNXPIXXAAXKLRPPL 770
+ + VCG I+PWN P+ A K+ P L
Sbjct: 134 KIYGQVIPTGPEKLAYAKRTPIGVCGQIVPWNYPLNMAGWKIAPAL 179
Score = 30.3 bits (65), Expect = 0.37
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 610 YYAGWADHIHGXVLPAAXXILCXHSSPATGXC 705
Y AGWAD I+G V+P L G C
Sbjct: 127 YCAGWADKIYGQVIPTGPEKLAYAKRTPIGVC 158
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 52.4 bits (120), Expect = 8e-08
Identities = 26/91 (28%), Positives = 44/91 (48%)
Frame = +3
Query: 285 FINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDAS 464
F+ +W+ S + KTF+ +NPA G++I +V FK ++
Sbjct: 21 FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFK---TYKNFTHV 77
Query: 465 ERGALINKLADLIERDXTYLASLXTLDNGKP 557
+R L+ + A+LI + L + TL+NGKP
Sbjct: 78 QRSQLLERWAELIMENKDDLVKMLTLENGKP 108
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 50.0 bits (114), Expect = 4e-07
Identities = 29/95 (30%), Positives = 44/95 (46%)
Frame = +3
Query: 285 FINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDAS 464
+I +WV ++ GKTF ENP + +A V F +R D
Sbjct: 27 YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFL---SYRNSDIK 83
Query: 465 ERGALINKLADLIERDXTYLASLXTLDNGKPYKDS 569
ER A++ + DLI + LA++ TL+NGK D+
Sbjct: 84 ERYAILRRWYDLIMENADDLATMMTLENGKALGDA 118
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 37.9 bits (84), Expect = 0.002
Identities = 37/167 (22%), Positives = 59/167 (35%), Gaps = 4/167 (2%)
Frame = +3
Query: 282 LFINNEWVKSSD--GKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTM 455
LFI+ ++V + K NPA ++I + F+ G W
Sbjct: 23 LFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGI-WAKW 81
Query: 456 DASERGALINKLADLIERDXTYLASLXTLDNGKPYKDSYFG-DXXASXXNLXV-LRRVGR 629
+RG ++ K+A ++ LA + T++ GKP + F D A +
Sbjct: 82 PGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDIDSCADMFEYYAEVAETDN 141
Query: 630 PHPRXCSARRXXXXXXXXXXSHWXVCGHIIPWNXPIXXAAXKLRPPL 770
P + V G I PWN P+ A KL P +
Sbjct: 142 PTVKVPLPNNPGFCAFEKRFPR-GVIGVITPWNFPLKMALWKLVPAI 187
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 712 TSYHGTSLYXXPLXSSGPLXXPGLSXXVITPGPXTPPSXRXP 837
TSY G +Y L +SGP GL+ ++ P PS P
Sbjct: 308 TSYRGHDVYTCTLPTSGPALIEGLN--ILDGYPLNTPSLAFP 347
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 444 WRTMDASERGALINKLADLIERDXTYLASLXTLDNGKPYKDSYFGD 581
W++ +ER + L + I R+ A + D GK D+ FG+
Sbjct: 41 WKSTSFAERRNFLKALKENIIRNQDKYAEIACKDTGKTLVDAAFGE 86
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 249 EPVPLKQLLQNSLFAPEPICRRSATFLIYLYVPKYTDKIISYSYRHKFI 103
+P + L+ ++ + +C R AT +Y Y P + +S+SYR I
Sbjct: 326 KPSTTSKNLKFTIMSYNVLCERYATSTLYGYTPSWA---LSWSYRKDLI 371
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,773
Number of Sequences: 5004
Number of extensions: 51085
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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