Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_C04
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0170 + 21482962-21483018,21483133-21483183,21483313-214835... 48 1e-05
07_03_0878 - 22251023-22251166,22251279-22251329,22251425-222515... 42 9e-04
07_01_0658 + 4923205-4923334,4923448-4923526,4923629-4923723,492... 37 0.024
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 31 1.6
07_03_0851 + 22012836-22014017,22016668-22016734,22016774-220168... 29 3.7
07_03_0724 + 20975942-20976867,20977397-20977476,20977976-209783... 29 4.9
12_02_0129 - 13981684-13982529 29 6.5
12_02_0112 + 13783758-13784717 29 6.5
10_07_0078 + 12657239-12658324 29 6.5
09_06_0276 + 21980147-21980285,21980369-21980550,21980867-219811... 28 8.5
07_03_0879 - 22256033-22256173,22256417-22256492,22256830-222572... 28 8.5
06_01_0433 - 3078576-3078780,3078797-3078951,3079782-3079821,307... 28 8.5
02_01_0523 - 3792864-3792962,3793509-3793610,3793861-3793974,379... 28 8.5
01_03_0151 - 13229861-13230347,13230442-13230540,13230701-132309... 28 8.5
>03_05_0170 +
21482962-21483018,21483133-21483183,21483313-21483500,
21483587-21483671,21483848-21483902,21483998-21484041,
21485045-21485113,21485207-21485307,21485396-21485452,
21485540-21485636
Length = 267
Score = 47.6 bits (108), Expect = 1e-05
Identities = 45/146 (30%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Frame = +2
Query: 170 RLLASSVSVANRAGKIVRDVMSKGELGIVEKGKDDYQTEADRSAQRCIVASLAAQYPNLK 349
+ LA +V A AG+I+R + + + KG+ D TE D++ + I L YP+ K
Sbjct: 5 QFLAVAVDAAKNAGEIIRKGFYQTK-NVEHKGQVDLVTETDKACEDLIFNHLRKHYPDHK 63
Query: 350 IIGEEDSLEDEGEVVSDWLVNEIDKEILKLQCPPNLQEVKEEDIVVW-VDPLDGTSEYTQ 526
I GE S L D D W VDPLDGT+ +
Sbjct: 64 FI---------GEETSAALGATADLT----------------DDPTWIVDPLDGTTNFVH 98
Query: 527 GFLEHVTVLIGIAVNETPVAGVIHQP 604
GF V V IG+ V + P GV++ P
Sbjct: 99 GF-PFVCVSIGLTVGKIPTVGVVYNP 123
>07_03_0878 -
22251023-22251166,22251279-22251329,22251425-22251500,
22251847-22252229,22252983-22253042,22253133-22253368,
22253457-22253559,22254692-22254824,22254930-22255039
Length = 431
Score = 41.5 bits (93), Expect = 9e-04
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 27/183 (14%)
Frame = +2
Query: 170 RLLASSVSVANRAGKIVRDV---MSKGELGIVEKGKDDYQTEADRSAQRCIVASLAAQYP 340
R LA++ + RA ++ DV + G+ I+EK T AD Q I L +P
Sbjct: 63 RELAAAAAAVERACRLCVDVKRTLLSGDKKILEKNDQTPVTVADFGVQALISLELQRLFP 122
Query: 341 NLKIIGEEDSLE----DEGEVVSDWLVNEIDKEILKLQCPPNLQEVKEEDIV-------- 484
++ ++ EEDS + + S+ LV I + + N + +D++
Sbjct: 123 SIPLVAEEDSASLRSSNTDDNSSNVLVESISSAVAEKVSNAN-SLLTHDDVLRAIDRGGK 181
Query: 485 -----------VWV-DPLDGTSEYTQGFLEHVTVLIGIAVNETPVAGVIHQPYYKNIVEG 628
WV DP+DGT + G V + + VNE VAGV+ P + N
Sbjct: 182 NAVSFDSNPASYWVLDPIDGTKGFLGGDDALYVVGLALVVNEKVVAGVMGCPNWSNATIA 241
Query: 629 DKK 637
+K
Sbjct: 242 SRK 244
>07_01_0658 +
4923205-4923334,4923448-4923526,4923629-4923723,
4923802-4923851,4924216-4924340,4924703-4924769,
4924871-4924960,4925281-4925392,4925597-4925667
Length = 272
Score = 36.7 bits (81), Expect = 0.024
Identities = 38/147 (25%), Positives = 62/147 (42%)
Frame = +2
Query: 164 IVRLLASSVSVANRAGKIVRDVMSKGELGIVEKGKDDYQTEADRSAQRCIVASLAAQYPN 343
+ RL+ + A+ AG+++R + + I++K T ADR A+ +V+ + +P+
Sbjct: 9 VERLVEVAQRAADAAGEVLRKYFRQ-RVEIIDKEDQSPVTIADREAEEAMVSVILKSFPS 67
Query: 344 LKIIGEEDSLEDEGEVVSDWLVNEIDKEILKLQCPPNLQEVKEEDIVVWVDPLDGTSEYT 523
+ GEE+ W E K D V +DP+DGT +
Sbjct: 68 HAVFGEENG----------WRCVE-----------------KSADYVWVLDPIDGTKSFI 100
Query: 524 QGFLEHVTVLIGIAVNETPVAGVIHQP 604
G T LI + PV G+I QP
Sbjct: 101 TGKPLFGT-LISLLYKGKPVIGIIDQP 126
>09_06_0048 +
20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 30.7 bits (66), Expect = 1.6
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Frame = +2
Query: 167 VRLLASSVSVANRAGKIVRDVMSKGELGIVEKGKDDYQTE---ADRSAQRCIVASLAAQY 337
VRL +S +V ++ DVM+ +G V D QT+ D A +V+S
Sbjct: 101 VRLDDTSAAVDEGGASLIDDVMNTLPVGGVASFDDGPQTDKNAQDEGALIDVVSSTVLND 160
Query: 338 PNLKIIGEEDSLEDEGEVVSDWLV--NEIDKEILKLQC 445
++ ++ DS+ +EG + D LV E KE++ + C
Sbjct: 161 ASIDLVKASDSVSEEGTGM-DILVQPGEDIKEMVTIAC 197
>07_03_0851 +
22012836-22014017,22016668-22016734,22016774-22016868,
22017304-22017717
Length = 585
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -1
Query: 735 MAXSSVITMDSGGGAGVNPPTPTPCSPQIVLPIFLSPSTIF 613
+A +S T D GAG++PP P+ SP +V F SP +F
Sbjct: 219 LAGASPSTTDLFNGAGLSPP-PSSSSPSLV---FSSPGRVF 255
>07_03_0724 +
20975942-20976867,20977397-20977476,20977976-20978370,
20988410-20989444
Length = 811
Score = 29.1 bits (62), Expect = 4.9
Identities = 24/100 (24%), Positives = 50/100 (50%)
Frame = +2
Query: 272 DYQTEADRSAQRCIVASLAAQYPNLKIIGEEDSLEDEGEVVSDWLVNEIDKEILKLQCPP 451
++ + +R+A C ++++ + L+ + +E+ +EDE E D LV + K
Sbjct: 576 NWAIDENRTACLCFDPAISSHFHVLEYVEDEEYVEDEDEY--DALVTGVVIYSSKTGLWS 633
Query: 452 NLQEVKEEDIVVWVDPLDGTSEYTQGFLEHVTVLIGIAVN 571
+++++V + P+D T + GFL VT +AV+
Sbjct: 634 LHVNGWDDEVMVSL-PVDRTRVFLNGFLHSVTTCDIVAVD 672
>12_02_0129 - 13981684-13982529
Length = 281
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 263 GKDDYQTEADRSAQRCIVASLAAQYPNLKIIGEEDSLEDEGEVVSDWLVNEIDK 424
G DY D + CI+A L A+ P + G D E GE+V VN+I +
Sbjct: 151 GSTDYDERVDAWSLGCIMAELLARKPLFR--GSSDR-EQLGEIVDVLGVNDIKR 201
>12_02_0112 + 13783758-13784717
Length = 319
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 263 GKDDYQTEADRSAQRCIVASLAAQYPNLKIIGEEDSLEDEGEVVSDWLVNEIDK 424
G DY D + CI+A L A+ P + G D E GE+V VN+I +
Sbjct: 189 GSTDYDERVDAWSLGCIMAELLARKPLFR--GSSDR-EQLGEIVDVLGVNDIKR 239
>10_07_0078 + 12657239-12658324
Length = 361
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Frame = +2
Query: 197 ANRAGKIVRDVMSKGELGIVEKGKDDYQTEADRSAQRCIVASLAAQYPNLK---IIGEE- 364
A+R G V+++ + + G+ ++ + D Q + DR + + P II E+
Sbjct: 120 AHRIGSRVKELNERMD-GLFKQAEADQQADTDRLKSSSTPGNPHSGNPRRTAPGIIHEDI 178
Query: 365 --DSLEDEGEVVSDWLVNEIDKEIL 433
D +E++ ++ DWL+N DK+ L
Sbjct: 179 VGDKIEEDKRMLVDWLINH-DKKYL 202
>09_06_0276 +
21980147-21980285,21980369-21980550,21980867-21981137,
21981263-21981351,21981474-21981538,21981656-21981758,
21982215-21982325,21982441-21982509,21982553-21982687
Length = 387
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 711 MDSGGGAGVNPPTPTPCSPQIVLPIFLSP 625
MD GG+G PP P P + V I + P
Sbjct: 1 MDKAGGSGEAPPEPEPAAAATVKSIVVYP 29
>07_03_0879 -
22256033-22256173,22256417-22256492,22256830-22257212,
22257924-22257983,22258073-22258303,22258475-22258562,
22259265-22259365,22259586-22259727,22259824-22259939
Length = 445
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 488 WV-DPLDGTSEYTQGFLEHVTVLIGIA--VNETPVAGVIHQPYYKNIVEGDKK 637
WV DP+DGT +++ ++ ++G+A VN VAGV+ P + + ++K
Sbjct: 226 WVLDPIDGTQGFSK--VDDTLYVVGLALVVNGKVVAGVMGSPNWASDTIANRK 276
>06_01_0433 -
3078576-3078780,3078797-3078951,3079782-3079821,
3079957-3080009,3080091-3080199,3080324-3080448,
3081112-3081201,3081280-3081342,3081453-3081544,
3081641-3081722,3081913-3082086,3082183-3082264,
3083100-3083224,3083312-3083389,3084047-3084402,
3085311-3085608
Length = 708
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 720 VITMDSGGGAGVNPPTPTPCSPQIVLPIFLSPST 619
V + GG+ P P P Q VLP FL P++
Sbjct: 35 VAELSRDGGSAQRPLAPAPLVKQPVLPTFLVPTS 68
>02_01_0523 -
3792864-3792962,3793509-3793610,3793861-3793974,
3794060-3794158,3794725-3794779,3795266-3795433,
3795668-3795735,3796133-3796195,3796425-3796703
Length = 348
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 260 KGKDDYQTEADRSAQRCIVASLAAQYPNLKIIGEEDSLEDEGEVVSDWL 406
KG D T+ D+ ++ I+ + +P+ I+GEE L G+ +S++L
Sbjct: 129 KGVADLVTDTDKLSESVILEVVRKTFPDHLILGEEGGL--IGDALSEYL 175
>01_03_0151 -
13229861-13230347,13230442-13230540,13230701-13230918,
13231210-13231317,13231366-13231518,13232962-13233015,
13233276-13233374,13234458-13234551,13234638-13234715,
13237696-13237766,13238321-13238416,13238505-13238582,
13238683-13238751,13238830-13238897,13239038-13239115,
13239190-13239289,13240002-13240061,13240488-13240579,
13241730-13241779,13241870-13241954,13242035-13242134,
13242933-13243013,13244827-13244907
Length = 832
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 578 VSHSQLYQLVQSHVLRILEYILKFH 504
V + Y ++QS VL +LEYI K H
Sbjct: 500 VENGDRYNMLQSGVLELLEYIRKVH 524
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,380,467
Number of Sequences: 37544
Number of extensions: 418233
Number of successful extensions: 1382
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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