Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_C03
         (948 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 775 PXXXXPPXPXSPXXPPXPPPRAXPPXXP 858
           P    PP P S   PP  PP A P   P
Sbjct: 34  PQRGSPPNP-SQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
 Frame = +1

Query: 799 PXSPXXPPXPPPRAXPPXXPXXPXXPPXXPXXPPP--HPXXPPXXXP 933
           P S    P P P   P         PP     PPP   P  PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQR--GSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
 Frame = +1

Query: 832 PRAXPPXXPXXPXXPPXXPXX-PPPHP-XXPPXXXPP--PP 942
           P +  P     P   P  P    PP+P   PP   PP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 743 PPXPXXPPPXP 775
           PP P  PPP P
Sbjct: 338 PPKPAPPPPPP 348


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -2

Query: 938 GGGXXXGGXXGXGGGXXGXXGG 873
           GG    G   G GGG  G   G
Sbjct: 36  GGSIVVGANNGGGGGGLGIASG 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,702
Number of Sequences: 438
Number of extensions: 6905
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)