Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_C02
         (976 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   2.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.5  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   9.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   9.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   9.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 745 PPRPXPXPXPPT 780
           PP+P P P PP+
Sbjct: 338 PPKPAPPPPPPS 349



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 760 PXPXPPTPPSXXSXP 804
           P P PP PP   S P
Sbjct: 339 PKPAPPPPPPSSSGP 353


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 776 LPPLPXXRXPXLPXXHLXPTP 838
           LPPLP  R   +P   L P P
Sbjct: 637 LPPLPPKRIRKMPSMPLLPRP 657


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 229 NYPGIMAPFPAPSGTRSFSSDCAXSSI 309
           +YPG  +  P+PS   SF S  + +S+
Sbjct: 82  SYPGGGSSSPSPSSPSSFFSSVSPTSL 108


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +1

Query: 745 PPRPXPXPXPPTPPSXXSXPXPS 813
           PP P   P P  PP       PS
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNPS 61



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +2

Query: 848 PPXXXAHXXSXPPPXPXFXXXAPXPPXXPLPAPP 949
           PP       S  PP P      P  P  P  A P
Sbjct: 418 PPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGP 451


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 141 LVVKCSRVSSKNMH 100
           L+V+CS +S  N+H
Sbjct: 100 LIVECSPISDANVH 113


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 199 LLLSTCSDWHNYPGIMAP 252
           LL+ST   W N+  ++AP
Sbjct: 126 LLISTGQKWRNHRKLIAP 143


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 104 IFLELTLEHFTTKAMLRFHPKLGSE 178
           ++ E+ LEH   +A    HP+L ++
Sbjct: 146 MYREMLLEHKKRRARRDIHPELNTQ 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,504
Number of Sequences: 438
Number of extensions: 6408
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)