Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_B21
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.057
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    24   2.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 0.057
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = +1

Query: 790 PXXSPPXXPPXPXPXXPP-PXXXPXPPXPPXPPP 888
           P  SP   P  P    PP P   P P  PP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.4 bits (53), Expect = 0.71
 Identities = 17/59 (28%), Positives = 18/59 (30%)
 Frame = +2

Query: 656 QRPQPXXXXXXXXXXXRPPPPXPXPXXXXXXXSXXAPXXXRXPXXPXXPPPXXPXXXPP 832
           Q+ QP             P P P P       S  AP     P     PPP  P   PP
Sbjct: 3   QQKQPIITQQSQQPSSGAPGPQPSP-----HQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/40 (27%), Positives = 11/40 (27%)
 Frame = +3

Query: 699 PXAPPPPXPXPXXXXXXXPPXXXXXXXPXXPXXXPPPXPP 818
           P   P P   P       PP       P  P   PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 584 PQGGTPLXPNXGIXXAXPXTXTPXQRP 664
           PQ G+P  P+ G     P    P Q P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/36 (27%), Positives = 11/36 (30%)
 Frame = +1

Query: 775 PXPXXPXXSPPXXPPXPXPXXPPPXXXPXPPXPPXP 882
           P P     +P    P      PPP   P  P    P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 15/60 (25%), Positives = 15/60 (25%)
 Frame = +2

Query: 707 PPPPXPXPXXXXXXXSXXAPXXXRXPXXPXXPPPXXPXXXPPXPXXXPXXPXXXPPPPXP 886
           P P  P P       S   P   R    P   PP       P        P   P P  P
Sbjct: 79  PQPRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPP 138


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 814 PPXPXPXXPPP 846
           PP P P  PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 856 PXPPXPPXPPP 888
           P  P PP PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 862 PPXPPXPPPXP 894
           PP P  PPP P
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,143
Number of Sequences: 438
Number of extensions: 5825
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)