Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_B20
         (921 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    26   0.42 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    26   0.42 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   9.0  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 171 KKSKXKARFPGXXXVMIVNSRVTVVSPNPSSKRRQKPLR 287
           ++S   +R P        N R TVVSP P+ +R  K ++
Sbjct: 878 QESSTDSRNPALALAEPYNQRGTVVSPPPTKRRTMKVVK 916


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 171  KKSKXKARFPGXXXVMIVNSRVTVVSPNPSSKRRQKPLR 287
            ++S   +R P        N R TVVSP P+ +R  K ++
Sbjct: 916  QESSTDSRNPALALAEPYNQRGTVVSPPPTKRRTMKVVK 954


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 825 PPPPXPPXPXP 857
           PP P PP P P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 859 PXXPXPXPPPP 891
           P  P P PPPP
Sbjct: 338 PPKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +3

Query: 630 APPXXPXSPXXXXXPXPXFPPPXXXPP 710
           +P   P +P     P P   PP   PP
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 177 SKXKARFPGXXXVMIVNSRVTVVSPNPSSKRR 272
           SK  + FPG     I+  +   +SP PS + R
Sbjct: 355 SKANSPFPGSTEADIIELQDLRMSPLPSIRNR 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,607
Number of Sequences: 438
Number of extensions: 7683
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)