Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_B19
         (860 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo...    31   5.4  
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto...    31   5.4  
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto...    31   5.4  
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto...    31   5.4  
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto...    31   5.4  
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto...    31   5.4  

>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
            protein.
          Length = 5202

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 19/88 (21%), Positives = 40/88 (45%)
 Frame = +3

Query: 438  RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLXGEQQSVLQDHNTKYNQYLK 617
            ++ ++ L      NP+ + I Y + + +  E  +W   T+  +++ V  ++NT+ N ++ 
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225

Query: 618  MSTTTCNCNSRDRVVYGGNSADSTREQW 701
              T        +  +Y  NSA  T   W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253


>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
            recessive, mild) protein.
          Length = 5202

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 19/88 (21%), Positives = 40/88 (45%)
 Frame = +3

Query: 438  RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLXGEQQSVLQDHNTKYNQYLK 617
            ++ ++ L      NP+ + I Y + + +  E  +W   T+  +++ V  ++NT+ N ++ 
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225

Query: 618  MSTTTCNCNSRDRVVYGGNSADSTREQW 701
              T        +  +Y  NSA  T   W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253


>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
            recessive, mild) protein.
          Length = 5202

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 19/88 (21%), Positives = 40/88 (45%)
 Frame = +3

Query: 438  RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLXGEQQSVLQDHNTKYNQYLK 617
            ++ ++ L      NP+ + I Y + + +  E  +W   T+  +++ V  ++NT+ N ++ 
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225

Query: 618  MSTTTCNCNSRDRVVYGGNSADSTREQW 701
              T        +  +Y  NSA  T   W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253


>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
            recessive, mild) protein.
          Length = 5202

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 19/88 (21%), Positives = 40/88 (45%)
 Frame = +3

Query: 438  RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLXGEQQSVLQDHNTKYNQYLK 617
            ++ ++ L      NP+ + I Y + + +  E  +W   T+  +++ V  ++NT+ N ++ 
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225

Query: 618  MSTTTCNCNSRDRVVYGGNSADSTREQW 701
              T        +  +Y  NSA  T   W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253


>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
            recessive, mild) protein.
          Length = 5202

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 19/88 (21%), Positives = 40/88 (45%)
 Frame = +3

Query: 438  RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLXGEQQSVLQDHNTKYNQYLK 617
            ++ ++ L      NP+ + I Y + + +  E  +W   T+  +++ V  ++NT+ N ++ 
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225

Query: 618  MSTTTCNCNSRDRVVYGGNSADSTREQW 701
              T        +  +Y  NSA  T   W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253


>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
            recessive, mild) protein.
          Length = 5202

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 19/88 (21%), Positives = 40/88 (45%)
 Frame = +3

Query: 438  RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLXGEQQSVLQDHNTKYNQYLK 617
            ++ ++ L      NP+ + I Y + + +  E  +W   T+  +++ V  ++NT+ N ++ 
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225

Query: 618  MSTTTCNCNSRDRVVYGGNSADSTREQW 701
              T        +  +Y  NSA  T   W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,457,012
Number of Sequences: 237096
Number of extensions: 1614745
Number of successful extensions: 3022
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3022
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)