Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_B18
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 404 e-114
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 204 2e-53
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 196 3e-51
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 124 2e-29
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 107 3e-24
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 103 3e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 94 3e-20
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 70 4e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 42 9e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 2.0
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 27 2.6
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc... 27 4.6
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 4.6
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S... 26 6.1
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.1
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 26 8.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 404 bits (995), Expect = e-114
Identities = 188/218 (86%), Positives = 203/218 (93%)
Frame = +2
Query: 29 GIP*DLPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 208
G+ +PIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLC
Sbjct: 158 GVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLC 217
Query: 209 YVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 388
YVALDFEQE+ TAA S+SLEKSYELPDGQVITIGNERFR PEALFQPS LG+E+ GIHE
Sbjct: 218 YVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEA 277
Query: 389 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITXLAPSTIKIKIIAPPERKY 568
YNSIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI LAPS++K+KI+APPERKY
Sbjct: 278 TYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKY 337
Query: 569 SVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 682
SVWIGGSILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 338 SVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 204 bits (497), Expect = 2e-53
Identities = 93/218 (42%), Positives = 144/218 (66%)
Frame = +2
Query: 29 GIP*DLPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 208
G+ +PIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR+IKEK C
Sbjct: 163 GLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCC 222
Query: 209 YVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 388
YVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G E+ G+H
Sbjct: 223 YVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQ 282
Query: 389 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITXLAPSTIKIKIIAPPERKY 568
++ SI+ D+D+R LY+N V+SGG+T+ G +R E+ ++ ++KI A PER +
Sbjct: 283 LFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMH 342
Query: 569 SVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 682
+ W+GGSILASLSTF+++ I+ EEY ++ ++ R+ F
Sbjct: 343 NAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 196 bits (479), Expect = 3e-51
Identities = 97/221 (43%), Positives = 145/221 (65%), Gaps = 12/221 (5%)
Frame = +2
Query: 29 GIP*DLPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 208
G+ +P+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR++KEKLC
Sbjct: 158 GVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLC 217
Query: 209 YVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 388
YV+ D E + + +T L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E
Sbjct: 218 YVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEF 277
Query: 389 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITXL--------APSTI---K 535
++++I DVDIRK LY V+SGG++MY G+ R++KEI L P+ + K
Sbjct: 278 IFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFK 337
Query: 536 IKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 655
+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 338 VKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 124 bits (298), Expect = 2e-29
Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 11/179 (6%)
Frame = +2
Query: 152 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 331
S+ +R ++ + KE + V + A AS+ K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRIS 299
Query: 332 EALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 484
E LF PSF S G+HE VY SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 485 ADRMQKEITXLAP-STIKIKII-APPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 655
++R+Q E+ LA S I + +VW GGSILASL FQ +W+SK+EYDE G
Sbjct: 360 SERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 107 bits (256), Expect = 3e-24
Identities = 71/231 (30%), Positives = 112/231 (48%), Gaps = 20/231 (8%)
Frame = +2
Query: 44 LPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 223
+P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV +IKE +CYV+ +
Sbjct: 171 IPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMME--ETYIVNEIKESVCYVSQN 228
Query: 224 FEQEMATAAAS--TSLEKSYELPD------------------GQVITIGNERFRCPEALF 343
F+++M + LE Y LPD QV+ + NERF PE LF
Sbjct: 229 FKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPELLF 288
Query: 344 QPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITXLAP 523
PS + + GI E V S+ +I+ L N V GG +PG R+ E+ LAP
Sbjct: 289 SPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAP 348
Query: 524 STIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 676
+ ++K+ P + W S + L + I++ EY E G I+ RK
Sbjct: 349 ANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 103 bits (247), Expect = 3e-23
Identities = 72/236 (30%), Positives = 113/236 (47%), Gaps = 21/236 (8%)
Frame = +2
Query: 29 GIP*DLPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEK 202
G+ +P+ EGY + +I + LAGRD+T ++ +L +R S TAER IKE+
Sbjct: 189 GVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEE 243
Query: 203 LCYVALDFEQEMATAAASTS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFLGMES 370
CYV D +E + L+ + E G TI G ERF PE F P +
Sbjct: 244 CCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDF 303
Query: 371 CG-IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITXLAPSTI----- 532
+ E V N + +D+RK LY N V+SGG+T++ +R+Q+++ + I
Sbjct: 304 LTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEM 363
Query: 533 ---------KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 673
+ +I+ ++ +VW GGS+LA F +K +Y+E G I R
Sbjct: 364 LSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.9 bits (223), Expect = 3e-20
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Frame = +2
Query: 374 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITXLAPSTIKIKIIAP 553
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 554 P---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 679
ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.1 bits (164), Expect = 4e-13
Identities = 32/115 (27%), Positives = 61/115 (53%)
Frame = +2
Query: 314 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 493
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 494 MQKEITXLAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 658
+++E+T + P I + W G S + F+ +++EEY E GP
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 42.3 bits (95), Expect = 9e-05
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +2
Query: 428 KDLYANTVMSGGTTMYPGIADRMQKEITXLAPSTIKIKIIAPP---ERKYSVWIGGSILA 598
K+LY++ ++ GG +PG A +++ I + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 599 SLSTFQQMWISKEEYDESGPGIVHRK 676
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +2
Query: 575 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 676
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 379 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGN 507
PR+ V R+R P P + R V PR RRQ +GN
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 22 TIGNSLRFTHLRRLRSAPRHPPSGLGWSRLDRLPHEDPHREGLLVHHHR 168
T GN++R+ H+++L + PR +G+ L +P P L H+ +
Sbjct: 25 TPGNNIRYLHIKKLGTIPRCGDTGV---PLQGIPALRPREFARLSHNQK 70
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 51 STKVTLCPTPSSVWTW 98
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 22 TIGNSLRFTHLRRLRSAPRHPPSGLGWSRLDRLPHEDPHREGLLVHHHR 168
T GN++R+ H+++L + PR +G+ L +P P L H+ +
Sbjct: 25 TPGNNIRYLHIKKLGTIPRCGDTGV---PLQGIPALRPREFARLSHNKK 70
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 500 KEITXLAPSTIKIKIIAPPERKYSVWIGGSILASLST 610
KEI+ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 750 RXRSEXGRAQH-HTAPGSRGRAX*KHL 673
R R + GR + HTAP RGR H+
Sbjct: 95 RGRGQRGRGNYGHTAPNRRGRGRGGHM 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,483
Number of Sequences: 5004
Number of extensions: 56733
Number of successful extensions: 186
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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