Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_B17
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 109 2e-24
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 33 0.41
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 31 1.7
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 30 2.9
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 29 6.7
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 28 8.8
02_02_0320 + 8926960-8927376 28 8.8
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 8.8
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 109 bits (263), Expect = 2e-24
Identities = 68/174 (39%), Positives = 97/174 (55%), Gaps = 3/174 (1%)
Frame = +3
Query: 129 MQLXKXIITGAALFSDTYKMKLVDE-VIYEVTGRLVTXAQGDIQIEGFNPSAEEA--DEG 299
M + + ++TG L SD++ + ++ +++EV G+ V D+ I G NPSAE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59
Query: 300 TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMN 479
D VDIV RL E F DKK + ++K Y+K L AKL+ ++ E FK N+
Sbjct: 60 VDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIE 115
Query: 480 KVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLXEEK 641
K +LG+ K+LQFF GESM DG + Y+ DG P ++F HGL E K
Sbjct: 116 GATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK--DGATDPTFLYFSHGLKEVK 167
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 32.7 bits (71), Expect = 0.41
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -1
Query: 572 FHHGNHAITIHGLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 438
FHH H ++ PSK+L ++L+ FH F ++C++Y + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 30.7 bits (66), Expect = 1.7
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +3
Query: 165 LFSDTYKMKLVDEVI-YEVTGRLVTXAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLN 341
LFS VDE I +E+ + G+I ++GF G D+AVE ++ V
Sbjct: 101 LFSGAETTDEVDEYIEFEINVGCIGGGGGNITVDGFRGGGSGGGRGGDAAVEIEINEV-- 158
Query: 342 HRLVETYAFGDKKS--YTLYLKD 404
R+ E K S Y L L D
Sbjct: 159 -RVSEVRGIAGKASGTYVLVLLD 180
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 369 GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 542
G +K TL L++Y+ +V A L+ +Q+E FK +NKV K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194
Query: 543 D 545
+
Sbjct: 1195 E 1195
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +3
Query: 342 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 521
H L+ A D S +L ++++ V +E+A Q+EV K + K+I EL
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236
Query: 522 FFTGE 536
+ E
Sbjct: 237 VLSKE 241
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 252 IQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKK 380
+ I N S EE +E ++A VD+ LN +E +G+KK
Sbjct: 711 VSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752
>02_02_0320 + 8926960-8927376
Length = 138
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 156 GAALFSDTYKMKLVDEVIYEVTGRLVTXAQGDIQIEGFNPSAEEADEGTDSA 311
GAA F Y ++VDE Y G A + P E +DEGT +A
Sbjct: 53 GAAAFEAYYGYRMVDEYYYYSYGGAAGPASWAGVLSSI-PEEESSDEGTPAA 103
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 444 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLA 346
APS + + SYSL GT + RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,975,027
Number of Sequences: 37544
Number of extensions: 301389
Number of successful extensions: 698
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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