Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_B16
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0878 + 23952594-23952802,23954846-23955083,23955122-239552...    31   1.6  
11_01_0218 - 1704459-1704629,1704895-1705119,1705120-1705277,170...    30   2.1  
09_01_0115 - 1761037-1761082,1761276-1761355,1761437-1761616,176...    30   2.1  
02_01_0258 - 1709672-1709752,1710277-1710460,1710627-1710841,171...    29   3.7  

>12_02_0878 +
           23952594-23952802,23954846-23955083,23955122-23955238,
           23955719-23955818,23956168-23956196,23956477-23956704
          Length = 306

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +2

Query: 146 AIFTVAQAAKATLKPISACCNIPELGNPEPLAECSNPK-LPGPCKDIQCVFEKSGFLTEN 322
           A+     AA A   P S     P   + +PL   +NP  LP            SG + E+
Sbjct: 16  ALPAAGAAAAANQSPASLPLGPPAAASAKPLVAAANPPLLPVVAPAAAAPKSSSGAVEES 75

Query: 323 KTLIKEAYKTHLRTMG 370
           K  ++E+ K+++ T+G
Sbjct: 76  KEGVEESNKSNVLTIG 91


>11_01_0218 -
           1704459-1704629,1704895-1705119,1705120-1705277,
           1705378-1705463,1705574-1705823,1706220-1707246
          Length = 638

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 451 NFLXSAYDVFTCTGIAMLKKCPN 519
           N L +AYD+FT    ++L+KCP+
Sbjct: 558 NILSTAYDLFTIFSFSVLEKCPH 580


>09_01_0115 -
           1761037-1761082,1761276-1761355,1761437-1761616,
           1761819-1761920,1763097-1763249,1764005-1764133,
           1764911-1765050,1766003-1766077,1768741-1768914,
           1769016-1769085
          Length = 382

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 317 ENKTLIKEAYKTHLRTMGERARGLVSGRGE 406
           + K L++ AY  +LR + + ARGL +G+GE
Sbjct: 6   QEKMLLQAAYDDNLRLLRKMARGLDTGQGE 35


>02_01_0258 -
           1709672-1709752,1710277-1710460,1710627-1710841,
           1711321-1711390,1711525-1711607,1711720-1711884,
           1712068-1712172,1713021-1713140,1713620-1713718,
           1713790-1713885,1714367-1714480,1715265-1715372,
           1716200-1716264,1716430-1716609,1716747-1717397,
           1717497-1717565,1717639-1717858
          Length = 874

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 152 FTVAQAAKATLKPISACCNIPELGNPEPLAEC---SNPKLP 265
           F VA +  A+ K IS CC   ++     +AEC   SNP +P
Sbjct: 410 FEVAPSISASEKIISVCCKSSKISLALDVAECLCKSNPDMP 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,421,376
Number of Sequences: 37544
Number of extensions: 327301
Number of successful extensions: 873
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)