Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_B13
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425...   142   2e-34
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335...   134   9e-32
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315...   134   1e-31
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30...    40   0.003
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736...    30   2.7  

>04_03_0871 -
           20441689-20441756,20442220-20442349,20442422-20442507,
           20444271-20444316,20444425-20444547,20445302-20445370
          Length = 173

 Score =  142 bits (345), Expect = 2e-34
 Identities = 74/120 (61%), Positives = 80/120 (66%)
 Frame = +2

Query: 137 VPLGPXXXVGAXVFGVAXXFASFNXTFVHVTXLSGRETXARVTGGMXVXADRXEASPYAA 316
           V LGP    G  VFGVA  FASFN TF+HVT LSGRET  R+TGGM V ADR E+SPYAA
Sbjct: 37  VTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAA 96

Query: 317 MLAAQXVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTP 496
           MLA+Q VA++CK LGITALHIKLRA            AQ          MKIGRIEDVTP
Sbjct: 97  MLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTP 156


>02_01_0469 -
           3359156-3359500,3359595-3359680,3359766-3359811,
           3359897-3360016,3360622-3360624
          Length = 199

 Score =  134 bits (324), Expect = 9e-32
 Identities = 76/141 (53%), Positives = 84/141 (59%)
 Frame = +2

Query: 137 VPLGPXXXVGAXVFGVAXXFASFNXTFVHVTXLSGRETXARVTGGMXVXADRXEASPYAA 316
           V LGP    G  VFGVA  FASFN TF+HVT LSGRET  R+TGGM V ADR E+SPYAA
Sbjct: 14  VTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAA 73

Query: 317 MLAAQXVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTP 496
           MLA+Q VA++CK LGITALHIKLRA            AQ          MKIGRI     
Sbjct: 74  MLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIGKFRV 133

Query: 497 XTIRLDP*EGWPKRTQAVICF 559
             I+       PK  + VICF
Sbjct: 134 SLIQ-------PKDIEIVICF 147


>02_04_0100 -
           19730137-19730237,19731215-19731344,19731419-19731504,
           19732410-19732455,19732558-19732680,19732779-19732781
          Length = 162

 Score =  134 bits (323), Expect = 1e-31
 Identities = 70/117 (59%), Positives = 76/117 (64%)
 Frame = +2

Query: 137 VPLGPXXXVGAXVFGVAXXFASFNXTFVHVTXLSGRETXARVTGGMXVXADRXEASPYAA 316
           V LGP    G  VFGVA  FASFN TF+HVT LSGRET  R+TGGM V ADR E+SPYAA
Sbjct: 15  VTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAA 74

Query: 317 MLAAQXVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIED 487
           MLA+Q VA++CK LGITALHIKLRA            AQ          MKIGRI D
Sbjct: 75  MLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIAD 131


>02_01_0045 +
           307058-307552,308670-308716,308779-308866,309664-309756,
           309788-309950,310554-310627,310889-310927
          Length = 332

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/31 (61%), Positives = 22/31 (70%)
 Frame = +2

Query: 260 VTGGMXVXADRXEASPYAAMLAAQXVAEKCK 352
           V GGM + AD  E+SPYAAML +Q VA  CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241


>08_02_0250 +
           14772746-14773037,14773141-14773203,14773458-14773621,
           14774126-14774220,14774517-14774728,14774972-14775009,
           14775131-14775424,14775510-14775617
          Length = 421

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 367 GLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDWP 477
           G  H  PC+ W    + W WC    SG C   +  WP
Sbjct: 345 GKPHGWPCWGW-DGAEMWLWCQSKNSGHC---HIGWP 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,368,162
Number of Sequences: 37544
Number of extensions: 211824
Number of successful extensions: 424
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)