Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_B12
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical pr...    33   0.27 
U64847-4|AAB04873.1|  492|Caenorhabditis elegans Cytochrome p450...    32   0.62 
AF016442-8|AAB65916.1|  881|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z75711-5|CAB00036.1|  423|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    28   7.6  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    28   7.6  
Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical p...    28   7.6  
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    28   7.6  
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical
           protein ZC116.1 protein.
          Length = 178

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 91  LVLCGLLAAVSAAPQYYHGSSHWPYHHYDP 180
           L LC LLA  SA   YY  S + PY++Y P
Sbjct: 5   LALCSLLAVASAQYLYYPTSYYTPYYYYYP 34


>U64847-4|AAB04873.1|  492|Caenorhabditis elegans Cytochrome p450
           family protein 14A5 protein.
          Length = 492

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = -3

Query: 532 AFASAGR*FSTRLSRKPSCLRNSHPREGSVFSSND 428
           AF + G  F  R  R P  L   HP  G VFSS D
Sbjct: 82  AFVTQGDAFVNRAQRLPEILFQPHPNTGVVFSSGD 116


>AF016442-8|AAB65916.1|  881|Caenorhabditis elegans Hypothetical
           protein K12B6.1 protein.
          Length = 881

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = -2

Query: 671 LVXWAVSKPTSTSRTXLSVVNSISSQLTFVGXVSVG---SATGLLLSSGCFCFSG--KVI 507
           L+  A +KP    +   +VVNSI       G +SVG   S TGL+L      FSG  KV 
Sbjct: 407 LIKLAAAKPHDRKKITDTVVNSIGLASEPKGIISVGAPESVTGLVLPKPDIYFSGGKKVF 466

Query: 506 FN 501
           +N
Sbjct: 467 WN 468


>Z75711-5|CAB00036.1|  423|Caenorhabditis elegans Hypothetical
           protein K02B12.7 protein.
          Length = 423

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 412 ANSAFNHYLKIQNLPWDVNSEGSWVYEKDVLKITFPLK-QKQPEDSKRPVAEPTETXPTN 588
           + + FN +LK  NLP    +EG      + LK T P++ +K+ E S +PV    +    N
Sbjct: 310 SQNEFNDWLKQSNLPRG-TTEGGDHLSNEELKPTEPVETKKKKERSVKPVQSKEKVTAEN 368

Query: 589 V 591
           V
Sbjct: 369 V 369


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
            F53B7.5b protein.
          Length = 2892

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -3

Query: 289  TSTTAPSSCRPSVAFRWQGW-TKANVCPTCFPERKD*RGRNGDTANVTSHGS 137
            TST A S C  S    WQ W T    C +C  +++  R  N      T  GS
Sbjct: 2804 TSTAAASDCSTSTWNAWQEWSTCTETCGSCGTQQRF-RSCNKPVDTCTCSGS 2854


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
            F53B7.5a protein.
          Length = 3095

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -3

Query: 289  TSTTAPSSCRPSVAFRWQGW-TKANVCPTCFPERKD*RGRNGDTANVTSHGS 137
            TST A S C  S    WQ W T    C +C  +++  R  N      T  GS
Sbjct: 2804 TSTAAASDCSTSTWNAWQEWSTCTETCGSCGTQQRF-RSCNKPVDTCTCSGS 2854


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
            protein F53B7.5b protein.
          Length = 2892

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -3

Query: 289  TSTTAPSSCRPSVAFRWQGW-TKANVCPTCFPERKD*RGRNGDTANVTSHGS 137
            TST A S C  S    WQ W T    C +C  +++  R  N      T  GS
Sbjct: 2804 TSTAAASDCSTSTWNAWQEWSTCTETCGSCGTQQRF-RSCNKPVDTCTCSGS 2854


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
            protein F53B7.5a protein.
          Length = 3095

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -3

Query: 289  TSTTAPSSCRPSVAFRWQGW-TKANVCPTCFPERKD*RGRNGDTANVTSHGS 137
            TST A S C  S    WQ W T    C +C  +++  R  N      T  GS
Sbjct: 2804 TSTAAASDCSTSTWNAWQEWSTCTETCGSCGTQQRF-RSCNKPVDTCTCSGS 2854


>Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical
           protein F28D1.9 protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 620 RAXCGTLTSAWRQPXRPMRSRKLXKRPRTL 709
           RA C T TS WR+P +P+ +  L K  R L
Sbjct: 4   RANCSTSTSNWRKP-KPLATDVLEKPARLL 32


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
           protein protein 6 protein.
          Length = 1106

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +1

Query: 487 YEKDVLKITFPLKQKQPE--DSKRPVAEPTE--TXPTNVSC 597
           Y+KDV+K+T  LK+K  E  D    +A   +  T P +V+C
Sbjct: 578 YKKDVIKLTHTLKEKDKELLDKIAEIAATPKSITTPRSVAC 618


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
           protein R193.2 protein.
          Length = 1853

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -2

Query: 758 SN*YGIGKNSASSLXLTAYVVAXTAFAISLVXWAVSKPTSTSRTXLSVVNSISSQ--LTF 585
           SN Y    NS  S  LT  + A T     +  +A      T+ T  SV+N++SSQ  LT 
Sbjct: 75  SNAYTSPTNSFGSAPLTTQINAFTQNPNGVNFYAELIFPDTTATPASVINALSSQGYLTN 134

Query: 584 VGXVSVGSATGLL 546
               S    +GL+
Sbjct: 135 AFVSSTSQCSGLI 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,091,190
Number of Sequences: 27780
Number of extensions: 350491
Number of successful extensions: 1009
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)