Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_B11
         (1047 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.82 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.8  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   5.8  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    27   5.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.8  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -1

Query: 1044 EGGAXXALXGXEXXGGGXGXXGGGXGXAXGEXGG 943
            EGG      G    GGG G  GGG G   G  GG
Sbjct: 234  EGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 18/46 (39%), Positives = 18/46 (39%)
 Frame = -3

Query: 1042 GGGXEXAXGVGXXGGWVXXRGRGXGGXGGXXWREXXXGGGXCGEGG 905
            GG      G G  GG     G G GG GG        GGG  G GG
Sbjct: 228  GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGP---GGFGGGPGGHGG 270



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -1

Query: 1041 GGAXXALXGXEXXGGGXGXXGGGXGXAXGEXGG 943
            GG      G    GGG G  GGG G   G  GG
Sbjct: 228  GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGG 260



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = -3

Query: 1012 GXXGGWVXXRGRGXGGXGGXXWREXXXGGGXCGEGGXXEXGGXXXAGAG 866
            G  GG+    G   GG GG        GGG  G GG     G    G G
Sbjct: 221  GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 23/62 (37%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
 Frame = -3

Query: 1045 RGGGXEXAXGV-GXXGGWVXXRG--RGXGGXGGXXWREXXXGGGXCGEGGXXEXGGXXXA 875
            RGG      G  G  GG+   RG  RG GG GG        GG   G GG     G    
Sbjct: 11   RGGSRGGRGGFNGGRGGFGGGRGGARG-GGRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69

Query: 874  GA 869
            GA
Sbjct: 70   GA 71



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -1

Query: 1041 GGAXXALXGXEXXGGGXGX-XGGGXGXAXGEXGGR 940
            GG      G    GGG G   GGG G A G  GGR
Sbjct: 16   GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGR 50



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -1

Query: 1041 GGAXXALXGXEXXGGGXGXXGGGXGXAXGEXGGR 940
            GG   +  G     GG G  GGG G A G  GGR
Sbjct: 9    GGRGGSRGGRGGFNGGRGGFGGGRGGARG--GGR 40



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
 Frame = -3

Query: 1012 GXXGGWVXXRGRGXGGXGGXXWREXXXGGGXCGEGG-XXEXGGXXXAGAGXG 860
            G  GG+   RG   GG GG   R    GG   G GG     GG   +  G G
Sbjct: 16   GGRGGFNGGRGGFGGGRGGA--RGGGRGGARGGRGGRGGARGGRGGSSGGRG 65



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -1

Query: 1041 GGAXXALXGXEXXGGGXGXXGGGXGXAXGEXGG 943
            GG   A  G    GG  G  GG  G   G  GG
Sbjct: 38   GGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 16/61 (26%), Positives = 18/61 (29%)
 Frame = +3

Query: 861  PXPAPALXXPPXSXXPPSPQXPPPXXXSLHXXPPXXXXXXXXXXXXXXXXPTPXAXSXPP 1040
            P P PA   PP      +P  P P        PP                P P A + P 
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPV 1239

Query: 1041 P 1043
            P
Sbjct: 1240 P 1240


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 944  PPXSPXAXPXPPPXXPHPPPXXSXPXSALXAP 1039
            PP  P      PP  P PPP  S   S   AP
Sbjct: 764  PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 17/60 (28%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
 Frame = +3

Query: 861  PXPAPALXXPPXS-XXPPSPQXPPPXXXSLHXXPPXXXXXXXXXXXXXXXXPTPXAXSXP 1037
            P PAP    PP      P P  PPP        PP                P P A   P
Sbjct: 744  PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +2

Query: 944  PPXSPXAXPXPPPXXPHPPPXXSXPXSALXAPP 1042
            P  +P   P P P    PPP    P  A   PP
Sbjct: 744  PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +2

Query: 941  LPPXSPXAXPXP---PPXXPHPPPXXSXPXSALXAP 1039
            LPP +P A P P   P   P PP   + P +   AP
Sbjct: 449  LPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 944  PPXSPXAXPXPPPXXPHPPPXXSXPXSALXAPP 1042
            PP  P   P  PP  P  P     P     APP
Sbjct: 436  PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 944  PPXSPXAXPXPPPXXPHPPPXXSXPXSALXA 1036
            PP  P + P PP   P P    S P   L A
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPA 1737



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
 Frame = +2

Query: 944  PPXSPXAXPXPPPX-XPHPPPXXSXPXSALXAPP 1042
            PP      P PPP   P PP     P     APP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
 Frame = +2

Query: 941  LPPXSPXAXPXP----PPXXPHPPP 1003
            LPP +P   P P    PP  P PPP
Sbjct: 4    LPPGNPPPPPPPPGFEPPSQPPPPP 28


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 1039 GGXEXAXGVGXXGGWVXXRGRGXGG 965
            GG     G G  GG+   RGRG GG
Sbjct: 454  GGFGGRGGFGGRGGFGGGRGRGRGG 478


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 107 HMPSTDEDTPRGLSGWV 157
           + P   +DTP+GLS W+
Sbjct: 565 YAPQASDDTPKGLSKWI 581


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
 Frame = +1

Query: 892  RXPXXPPPRSXPPRXXPPST--LXXRXPXAPSXXPXPTPP 1005
            R P   PPR   P   P S   +  + P  PS  P P  P
Sbjct: 138  RPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 947  PXSPXAXPXPPPXXPHPPPXXSXPXSALXAPPS 1045
            P  P A P  PP  P PPP    P +   + PS
Sbjct: 188  PSLPSAVPPMPPKVP-PPPLSQAPVANTSSRPS 219



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +3

Query: 867 PAPALXXPPXSXXPPSPQXPPPXXXSLHXXP 959
           P P     P +  PP P  PPP   S    P
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIP 161



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
 Frame = +3

Query: 867  PAPALXXPPXSXXPPSPQXPPPXXXSLHXXPPXXXXXXXXXXXXXXXXPT---PXAXSXP 1037
            P P++  P  +  PP P   PP   SL   PP                P+   P     P
Sbjct: 145  PRPSIPPPSPASAPPIPSKAPPIPSSL--PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202

Query: 1038 PP 1043
            PP
Sbjct: 203  PP 204



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 861 PXPAPALXXPPXSXXPPSPQXPPP 932
           P P+PA   P  S  PP P   PP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPP 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,798
Number of Sequences: 5004
Number of extensions: 30391
Number of successful extensions: 245
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 549226150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)