Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_B10
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 37 0.004
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 36 0.006
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 35 0.014
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 28 1.6
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 27 4.8
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 27 4.8
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 26 6.3
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 8.3
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 36.7 bits (81), Expect = 0.004
Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Frame = +3
Query: 147 PLPKIENDDDVIVKVEYSGICGTDLHI-VQG*VSGF-QRAPLTAWSRIQWHHYGCWEEVC 320
P + +D V V ++ +GICG+D+H +G + F + P+ + V
Sbjct: 22 PGQTLTDDHQVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVS 81
Query: 321 L*XKVRRSSWIRTEPAASG---DFCRKGXYQYCLTAGIXSTVGIWRDGGWAQYVKVPQDQ 491
++ + EP D+CR G Y C +T DG Y +D
Sbjct: 82 ---SLKPGDPVAVEPGCVCRLCDYCRSGRYNLCPHMEFAATPPY--DGTLRTYYITTEDF 136
Query: 492 VYLLPDGVSTEXGGLCEPYSCVAXGYDRAS 581
LP +S E G L EP S R +
Sbjct: 137 CTKLPKQISVEEGALFEPMSVAVHAMTRGN 166
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 256 ERPLPLGHEFSGTITDVGK 312
++P+ LGHE +G + +VGK
Sbjct: 60 KKPMILGHESAGVVVEVGK 78
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 36.3 bits (80), Expect = 0.006
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = +3
Query: 171 DDVIVKVEYSGICGTDLHIVQG 236
D+V+V ++Y+G+C TDLH +QG
Sbjct: 34 DEVLVNIKYTGVCHTDLHALQG 55
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 35.1 bits (77), Expect = 0.014
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 90 MEAVVFDGKTLTLKYDNKYPLPKIENDDDVIVKVEYSGIC-GTDLHIVQG*VSGFQRAPL 266
M+A V+DG L +K + P P I + DVIVK IC G+D HI G + G ++ +
Sbjct: 37 MKACVWDGP-LNVKIA-EVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGAI 94
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 99 VVFDGKTLTLKYDNKYPLPKIENDDDVIVKVEYSGICGTD 218
V++ T KYD K LP+ +D V ++Y G +D
Sbjct: 208 VIYPDWNFTNKYDPKCELPRFWGEDGAPVVIDYVGCYDSD 247
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 4.8
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 11/55 (20%)
Frame = +3
Query: 105 FDGKTLTLK----YDNKYPLPKIENDD-------DVIVKVEYSGICGTDLHIVQG 236
F+GKT+T K + K PL IE+ +V VKV++S +C TD + + G
Sbjct: 3 FEGKTITCKAAVAWGAKEPL-SIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSG 56
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +1
Query: 190 WSTPGYVGLTYTLYRXEFPASKERPLP-LGHEFSGTITDVGKKS 318
W P Y L P + E+P+P LG + T + G+ S
Sbjct: 470 WGNPNYTCLYQVRVHGTVPNADEQPIPSLGEKAESTAENTGQDS 513
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 148 GYLLSYFNVKVFPSKTTASIL-NFSLRCASNKNSK 47
GY+++YF K F S A+ + +F++ C N S+
Sbjct: 632 GYVVNYFTAKHFGSNPIANAIGSFAIGCLGNIYSR 666
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 115 FPSKTTASILNFSLRCASNKN 53
FPS TTA L+F+ +C + N
Sbjct: 249 FPSLTTAETLDFAAKCRTPNN 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,220
Number of Sequences: 5004
Number of extensions: 53442
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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