Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_B10
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81570-2|CAB04604.1|  349|Caenorhabditis elegans Hypothetical pr...    43   3e-04
Z70782-3|CAA94841.1|  347|Caenorhabditis elegans Hypothetical pr...    42   6e-04
Z70782-4|CAA94842.1|  347|Caenorhabditis elegans Hypothetical pr...    40   0.003
AF125951-1|AAD14690.3|  326|Caenorhabditis elegans Hypothetical ...    38   0.007
Z81570-3|CAB04603.1|  351|Caenorhabditis elegans Hypothetical pr...    35   0.090
U41107-6|AAC71165.3|  340|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>Z81570-2|CAB04604.1|  349|Caenorhabditis elegans Hypothetical
           protein K12G11.3 protein.
          Length = 349

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 23/57 (40%), Positives = 34/57 (59%)
 Frame = +3

Query: 96  AVVFDGKTLTLKYDNKYPLPKIENDDDVIVKVEYSGICGTDLHIVQG*VSGFQRAPL 266
           A+VFD     L+   + P+P    DD+++VK+EYSGIC +DLH+  G +      PL
Sbjct: 11  ALVFDTWNGPLEV-RQVPVPS-PADDEILVKIEYSGICHSDLHVWLGDLKDMSVCPL 65


>Z70782-3|CAA94841.1|  347|Caenorhabditis elegans Hypothetical
           protein R04B5.5 protein.
          Length = 347

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 2/156 (1%)
 Frame = +3

Query: 90  MEAVVFDGKTLTLKYDNKYPLPKIENDDDVIVKVEYSGICGTDLHI-VQG*VSGF-QRAP 263
           + AV++    L L+   + P+PK    + V+VKV   GICG+D+H    G +  F  + P
Sbjct: 6   LSAVLYGVDDLRLE---QVPIPK-PGPNQVLVKVHTVGICGSDVHYWTHGAIGPFVVKEP 61

Query: 264 LTAWSRIQWHHYGCWEEVCL*XKVRRSSWIRTEPAASGDFCRKGXYQYCLTAGIXSTVGI 443
           +               EV       R +     P    + C+ G Y  C      +T  +
Sbjct: 62  MIVGHETSGIVSEVGNEVKHLKVGDRIAMEPGLPCKLCEHCKTGRYNLCPEMRFFATPPV 121

Query: 444 WRDGGWAQYVKVPQDQVYLLPDGVSTEXGGLCEPYS 551
              G  +++V    D  + LPD +S E G L EP S
Sbjct: 122 --HGTLSRFVVHDADFCFKLPDNLSFEDGALIEPLS 155


>Z70782-4|CAA94842.1|  347|Caenorhabditis elegans Hypothetical
           protein R04B5.6 protein.
          Length = 347

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
 Frame = +3

Query: 177 VIVKVEYSGICGTDLH-IVQG*VSGF-QRAPLTAWSRIQWHHYGCWEEVCL*XKVRRSSW 350
           V+VK+   GICG+D+H +  G +  F  + P+               EV       R + 
Sbjct: 31  VLVKINTVGICGSDVHFLTHGAIGSFVVKEPMVLGHESSGVVSEIGSEVKGFKVGDRIAM 90

Query: 351 IRTEPAASGDFCRKGXYQYCLTAGIXSTVGIWRDGGWAQYVKVPQDQVYLLPDGVSTEXG 530
               P    + C+ G Y  C      +T  +  +G  +++V    D  + LPD +S E G
Sbjct: 91  EPGLPCKLCEHCKIGRYNLCPDMRFFATPPV--NGALSRFVVHDADFCFKLPDNLSFEDG 148

Query: 531 GLCEPYS 551
            L EP S
Sbjct: 149 ALLEPLS 155


>AF125951-1|AAD14690.3|  326|Caenorhabditis elegans Hypothetical
           protein D2063.1 protein.
          Length = 326

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
 Frame = +3

Query: 96  AVVFD--GKTLTLKYDNKYPLPKIENDDDVIVKVEYSGICGTDLHIVQG*VSGFQRAPL 266
           A++F+  G  L +K   + P+P+  N+D+++VK+EYSGIC +D+H   G      + P+
Sbjct: 12  ALIFESYGGPLEIK---QLPIPQ-PNEDELLVKMEYSGICHSDVHTWLGDFHYVSKCPM 66


>Z81570-3|CAB04603.1|  351|Caenorhabditis elegans Hypothetical
           protein K12G11.4 protein.
          Length = 351

 Score = 34.7 bits (76), Expect = 0.090
 Identities = 12/23 (52%), Positives = 20/23 (86%)
 Frame = +3

Query: 168 DDDVIVKVEYSGICGTDLHIVQG 236
           +++++VK+EYSGIC +DLH  +G
Sbjct: 34  ENELLVKIEYSGICHSDLHTWEG 56


>U41107-6|AAC71165.3|  340|Caenorhabditis elegans Hypothetical
           protein F55C12.6 protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 132 YDNKYPLPKIENDDDVIVK 188
           YD K P+PKI++D +++VK
Sbjct: 171 YDFKVPIPKIKDDCEIVVK 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,393,394
Number of Sequences: 27780
Number of extensions: 325081
Number of successful extensions: 735
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)