Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_B09
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   3.5  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.8 bits (49), Expect(2) = 1.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 710 PPPPPPP 730
           PPPPPPP
Sbjct: 946 PPPPPPP 952



 Score = 23.0 bits (47), Expect(2) = 1.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 707 TPPPPPP 727
           TPPPPPP
Sbjct: 906 TPPPPPP 912


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.8 bits (49), Expect(2) = 3.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 710 PPPPPPP 730
           PPPPPPP
Sbjct: 762 PPPPPPP 768



 Score = 21.4 bits (43), Expect(2) = 3.5
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 707 TPPPPPP 727
           +PPPPPP
Sbjct: 731 SPPPPPP 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,015,180
Number of Sequences: 5004
Number of extensions: 7542
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)