Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_B08
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    45   1e-05
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    28   1.5  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    26   7.9  

>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
 Frame = +3

Query: 138 YFHIAEGXRKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGXHVEVRDP--NDRI 311
           +F+      KCF++++P    V    K E ++ ++  ++ T+  I   V+V +   N+ +
Sbjct: 21  HFYFDGSKPKCFLKDMPKGMMVTGIVKAEQWNNEANKWV-TSNNIKIRVQVDETFANNHL 79

Query: 312 LLSRVYSLEGMISFTSXTPGEHVICMYSNST-SWFSGSXLRVHLDI 446
           +          + FT+   G H IC  S S  +WFS +  R+H+D+
Sbjct: 80  IYKNDLRSNEAVRFTTTNEGTHRICYLSTSDGAWFSSTKTRLHVDL 125


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/80 (22%), Positives = 38/80 (47%)
 Frame = +3

Query: 162 RKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGXHVEVRDPNDRILLSRVYSLEG 341
           R+CF E + ++  + V Y+  +     GG    +      + + +P  +I+   V +   
Sbjct: 31  RECFYENLRNNDQMSVTYQTNV-----GGDQLVS------MSIYNPAGQIMHQEVPNSMA 79

Query: 342 MISFTSXTPGEHVICMYSNS 401
             SFT   PG+++ C Y+++
Sbjct: 80  QYSFTVKNPGKYMYCFYNDA 99


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 177 EEIPDDTTVIVNYKVELYDPKSGGF 251
           +++ DD     NYKV L   KSGGF
Sbjct: 820 QQLIDDFHTNENYKVFLLSTKSGGF 844


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,673
Number of Sequences: 5004
Number of extensions: 33387
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)