Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_B08
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    27   0.29 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    27   0.29 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.3  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 562 GLPEAKXXASPTNLRKPXPXVLWWSLXRXVXLSSS 666
           G+P AK    P   RKP P   W  +     L +S
Sbjct: 64  GIPFAKPPIGPLRFRKPLPIEPWHGVLNATVLPNS 98


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 562 GLPEAKXXASPTNLRKPXPXVLWWSLXRXVXLSSS 666
           G+P AK    P   RKP P   W  +     L +S
Sbjct: 64  GIPFAKPPIGPLRFRKPLPIEPWHGVLNATVLPNS 98


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 320 SSLFVGRXDLIHIXHSW 370
           S+L+  R DL+H+  SW
Sbjct: 658 STLYSKRPDLLHLFGSW 674


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 320 SSLFVGRXDLIHIXHSW 370
           S+L+  R DL+H+  SW
Sbjct: 658 STLYSKRPDLLHLFGSW 674


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 320 SSLFVGRXDLIHIXHSW 370
           S+L+  R DL+H+  SW
Sbjct: 658 STLYSKRPDLLHLFGSW 674


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 520 LDXCWIQYPXXXGAGLPEAKXXASPTNLRKPXPXVLWWSLXRXVXL 657
           L   W QYP   G G+ + +   S T+       ++ +S+ R + +
Sbjct: 91  LSVFWQQYPWQWGLGICKLRAYVSETSSYVSVLTIVAFSIERYLAI 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,405
Number of Sequences: 438
Number of extensions: 2582
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)