Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_B07
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93372-2|CAB07547.2|  505|Caenorhabditis elegans Hypothetical pr...    79   3e-15
U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone...    29   3.2  
AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear recep...    29   3.2  
AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear recep...    29   3.2  
Z99284-1|CAB16541.2|  607|Caenorhabditis elegans Hypothetical pr...    28   9.9  

>Z93372-2|CAB07547.2|  505|Caenorhabditis elegans Hypothetical
           protein BE10.2 protein.
          Length = 505

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
 Frame = +1

Query: 265 FANAXVEXGFSDFVTDHLKGVGXLFYINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEX 444
           F+N  +     D +T  L  +   FY+ SP ++  E  DDVPN+  +   ++ +F+  E 
Sbjct: 11  FSNTSLGHRLLDRLT--LTNLRHAFYLISPYETTVESIDDVPNYNAEVSAWWLVFLTAEF 68

Query: 445 IVLRLKG-KPGVRLNDGITSISHGIFQECGRIIWRGAESYLYXWIYTNYRLVELPWDSTL 621
            +L + G +    LND ITSI  G+  +C +   R    +LY  ++ N+R++ELPWDS  
Sbjct: 69  FILFISGHEDRFALNDSITSICAGMLSQCFKFGGRAVAIFLYVIVWDNWRILELPWDSPW 128

Query: 622 TW 627
           TW
Sbjct: 129 TW 130



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +2

Query: 650 DFCYYWMXRTCHEVHILWAQXQVXXTSXDFNMGVGXRXSVLQ 775
           DF YY   R  HE    W    +  +S  +N     R + +Q
Sbjct: 138 DFMYYLGHRAVHEAGFFWGLHTIHHSSEYYNFSTALRQAAIQ 179


>U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 107 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 337 FYINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEXIVLRLKGKPGVRL 483
           FY+N+ +D+    ++D+   F+  W Y F  +I   + L+L     + L
Sbjct: 219 FYVNTVRDNSAISQEDIIRVFEPYWKYHFEQVIDPFLALKLNDMENMAL 267


>AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 337 FYINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEXIVLRLKGKPGVRL 483
           FY+N+ +D+    ++D+   F+  W Y F  +I   + L+L     + L
Sbjct: 219 FYVNTVRDNSAISQEDIIRVFEPYWKYHFEQVIDPFLALKLNDMENMAL 267


>AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 337 FYINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEXIVLRLKGKPGVRL 483
           FY+N+ +D+    ++D+   F+  W Y F  +I   + L+L     + L
Sbjct: 219 FYVNTVRDNSAISQEDIIRVFEPYWKYHFEQVIDPFLALKLNDMENMAL 267


>Z99284-1|CAB16541.2|  607|Caenorhabditis elegans Hypothetical
           protein Y7A9A.1 protein.
          Length = 607

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
 Frame = -1

Query: 515 IPCDILVIPSLSLTPGFPF--SLRTMXSRIMKMKKYGH-DCLKKFGTSSFFSNIES*GEF 345
           IP   LV+P+  L  GFP   ++     RI K K+    + L+   TS F       GE 
Sbjct: 186 IPWSDLVMPAAQLAKGFPMHKAMHDYFDRISKYKERPEIEALRNLYTSKFTGEFYKVGEI 245

Query: 344 M*KXLPTPFR*SVTKSEKP 288
           +       F   +  S+ P
Sbjct: 246 VANYPLAKFLRLIANSQDP 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,343,589
Number of Sequences: 27780
Number of extensions: 239393
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)