Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_B06
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-10|AAB71040.2|  154|Caenorhabditis elegans He1 homologu...    59   4e-09
AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical ...    30   2.5  

>AF025467-10|AAB71040.2|  154|Caenorhabditis elegans He1 homologue
           protein 1 protein.
          Length = 154

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
 Frame = +3

Query: 135 EFNVVTTRLCREVDASACTVNEVRIDPCV-----NSRLCHLKKGKNAKVSFDFTPQFSTT 299
           EF  +  ++C+    S  TV++V+ D C        ++C  KKG    +   F P   T 
Sbjct: 16  EFIEIGYKVCK----SDGTVSQVKADGCELTVKDGKKVCLFKKGSRPIIQIAFKPSKDTD 71

Query: 300 KLKTGLFGLKNGAEIPFDALYNADACTL-TSCPTEAGKTQTLDFSLHIGKKLPTGN-FEF 473
           KLKT +     G+ +      N+DACT    CP  AG+ Q  + S+ I +  P G   + 
Sbjct: 72  KLKTSVRAKVGGSAMVDFPQTNSDACTYGVKCPVSAGENQIFEQSISITENHPAGEVIQV 131

Query: 474 KWKLWNEDHESQMC 515
            W+L   D   ++C
Sbjct: 132 NWQLTRPDSGKEVC 145


>AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical
           protein Y43C5A.4 protein.
          Length = 218

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 208 LTPVLTVDCATSRKGKTRRFLSTLH 282
           LTP++T  C+   KGK ++ LS+ H
Sbjct: 31  LTPIITAQCSKKPKGKKKKKLSSSH 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,527,085
Number of Sequences: 27780
Number of extensions: 314679
Number of successful extensions: 742
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)