Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_B04
(989 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 0.49
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.8
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.1
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 3.7
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 4.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 5.4
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 26 7.1
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 823 SXXXPXTXSAPPXXPXPXPPPXPPP 897
S P T + P P PPP PPP
Sbjct: 220 SPEIPPTYTPKQADPLPAPPPPPPP 244
Score = 25.4 bits (53), Expect(2) = 0.49
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 803 PPXPPXXPPXXRXPXPRPPXXPXXT 877
P PP P P P PP P T
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPT 245
Score = 23.0 bits (47), Expect(2) = 0.49
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +2
Query: 773 LPXXLTPPQXPPXPP 817
LP PP PP PP
Sbjct: 183 LPSDYNPPPPPPPPP 197
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 867 GXXGGRGXGXRXXGGXXGG*GGXWGGVR 784
G GGRG GG GG GG GG +
Sbjct: 45 GGRGGRGGARGGRGGSSGGRGGAKGGAK 72
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Frame = -2
Query: 898 GGXGXGXGXXG----XGGGARXXSPGXGXXXGGXGGXLGG 791
G G G G G GGAR G G GG GG GG
Sbjct: 24 GRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -2
Query: 877 GXXGXGGGARXXSPGXGXXXGGXGGXLGGGEXXG 776
G G GG+R G GG GG GG G
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGG 39
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 773 LPXXLTPPQXPPXPPXXPPXXRXPXPRPP 859
LP PP PP PP P + P P PP
Sbjct: 4 LPPGNPPP--PPPPPGFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 791 PPQXPPXPPXXPPXXRXPXPRPPXXP 868
PP PP PP PP P PP P
Sbjct: 5 PPGNPP-PPPPPPGFEPPSQPPPPPP 29
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.8
Identities = 23/74 (31%), Positives = 25/74 (33%)
Frame = +2
Query: 419 PXGXXPLEKXSPGXXPHLAPQKTHXPNPSXSPTXPPXPNXPXTXXXXXXXRXXPPPHHXX 598
P G P+ K S P AP P P + PP P P PP
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP-PPSEAPPVPKPSVGVPPVPPP 1213
Query: 599 STWALPPPHPXTXL 640
ST A P P P L
Sbjct: 1214 ST-APPVPTPSAGL 1226
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -2
Query: 898 GGXGXGXGXXGXGGGARXXSPGXGXXXGGXGG 803
G G G G G G G PG GG GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGG 215
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 898 GGXGXGXGXXGXGGGARXXSPGXGXXXGGXGGXLGGG 788
GG G G G GG G GG G GGG
Sbjct: 214 GGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -2
Query: 898 GGXGXGXGXXGXGGGARXXSPGXGXXXGGXGGXLGGG 788
G G G G GGG G G GG G GGG
Sbjct: 229 GPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG-GFGGG 264
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 776 PXXLTPPQXPPXPPXXPPXXRXPXPRPP 859
P PP P PP PP P PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +2
Query: 776 PXXLTPPQXPPXPPXXPPXXRXPXPRPPXXP 868
P PPQ P PP P P P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.0 bits (47), Expect(2) = 3.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 871 PXPPPXPPP 897
P PPP PPP
Sbjct: 945 PPPPPPPPP 953
Score = 22.2 bits (45), Expect(2) = 3.7
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +1
Query: 847 SAPPXXPXPXPPPXPP 894
S P P PPP PP
Sbjct: 897 SLPTIITHPTPPPPPP 912
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 4.1
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -2
Query: 898 GGXGXGXGXXGXGGGARXXSPGXGXXXGGXGGXLGG 791
GG G G G GGG+R G G G GG GG
Sbjct: 152 GGFG-GNSRGGFGGGSRGGF-GGGSRGGSRGGFRGG 185
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 334 PPXXXKXGPSXXPXPGPAXXGQNXPXXPP 420
PP S P P PA G++ P PP
Sbjct: 377 PPLSSSRAVSNPPAPPPAIPGRSAPALPP 405
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = -3
Query: 621 GGGRAQVEXXWWGGGXXRXXXXXXXVXGXLGXGGXVGEXXGFGXW 487
GG R +GGG R G GG GFG W
Sbjct: 72 GGRREYNRGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRGFGQW 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,339,881
Number of Sequences: 5004
Number of extensions: 16370
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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