Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_B01
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    66   6e-12
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    64   2e-11
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   7.9  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = +1

Query: 418 TKLRAIWGXVXRPHGXSGXVRAKFXSNLPAXAMGXXIRVMLYPSRI 555
           +K+R IWG + RPHG SG VRA+F  NLPA   G  +RVMLYPS I
Sbjct: 63  SKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 213 PRHG-RLYAKAVFTGXKRGLRXQHENTALLKVEGAXXRNDAVFYAGXXCVYVY 368
           P  G RLY KA     +R     H  T+++K+EG   + +A FY G    YVY
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVY 54


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 27/46 (58%), Positives = 32/46 (69%)
 Frame = +1

Query: 418 TKLRAIWGXVXRPHGXSGXVRAKFXSNLPAXAMGXXIRVMLYPSRI 555
           +K+R IWG V RPHG SG VRA+F  NLP    G  +RVMLYPS +
Sbjct: 63  SKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 213 PRHG-RLYAKAVFTGXKRGLRXQHENTALLKVEGAXXRNDAVFYAGXXCVYVYXAKXXXP 389
           P  G RLY KA     +R     H  T+L+K+EG   + +A FY G    +VY  K   P
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVY--KSNKP 59

Query: 390 IPG 398
           + G
Sbjct: 60  VRG 62


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 467 EXPCGRXTXPQIARSLVFLPTGTSGNXXPLLS 372
           E   G  T   I+R +V+ PTG + N  PLL+
Sbjct: 71  ELRLGDLTPSVISRYVVWSPTGLADNYDPLLT 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,561,166
Number of Sequences: 5004
Number of extensions: 17461
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)