Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_B01
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451     66   4e-11
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009     65   8e-11
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756...    51   1e-06

>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
          Length = 112

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 29/46 (63%), Positives = 32/46 (69%)
 Frame = +1

Query: 418 TKLRAIWGXVXRPHGXSGXVRAKFXSNLPAXAMGXXIRVMLYPSRI 555
           T  R IWG V RPHG SG VRAKF SNLP  +MG  +RV +YPS I
Sbjct: 67  TNYRCIWGKVTRPHGNSGVVRAKFKSNLPPASMGRKVRVFMYPSSI 112



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = +3

Query: 225 RLYAKAVFTGXKRGLRXQHENTALLKVEGAXXRNDAVFYAGXXCVYVYXAK 377
           RLY +    G KR    Q+ENT+L+++EG   + +  +Y G    YVY AK
Sbjct: 11  RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAK 61


>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
          Length = 111

 Score = 64.9 bits (151), Expect = 8e-11
 Identities = 28/44 (63%), Positives = 32/44 (72%)
 Frame = +1

Query: 424 LRAIWGXVXRPHGXSGXVRAKFXSNLPAXAMGXXIRVMLYPSRI 555
           +R IWG V RPHG SG VRAKF SNLP  +MG  +RV +YPS I
Sbjct: 68  IRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKVRVFMYPSSI 111



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = +3

Query: 201 KASKPRHGRLYAKAVFTGXKRGLRXQHENTALLKVEGAXXRNDAVFYAGXXCVYVYXAK 377
           K  + +  RLY +    G KR    Q+ENT+LL++EG   + +  +YAG    YVY AK
Sbjct: 2   KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAK 60


>05_07_0069 +
           27475072-27475136,27475237-27475465,27475532-27475630,
           27476172-27476287,27476670-27476757
          Length = 198

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = +3

Query: 201 KASKPRHGRLYAKAVFTGXKRGLRXQHENTALLKVEGAXXRNDAVFYAGXXCVYVYXAK 377
           K  + +  RLY +    G KR    Q+ENT+LL++EG   + +  +YAG    YVY AK
Sbjct: 2   KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAK 60



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = +1

Query: 424 LRAIWGXVXRPHGXSGXVRAKFXSNLPAXAM 516
           +R IWG V RPHG SG VRAKF SNLP  +M
Sbjct: 68  IRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,610,947
Number of Sequences: 37544
Number of extensions: 148624
Number of successful extensions: 242
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)