Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_B01
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...    75   5e-14

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 35/59 (59%), Positives = 42/59 (71%)
 Frame = +3

Query: 198 RKASKPRHGRLYAKAVFTGXKRGLRXQHENTALLKVEGAXXRNDAVFYAGXXCVYVYXA 374
           R+ S P  GRLY KA+FTG KRGLR Q E+T+LLK+EG   + DA FYAG   VY+Y A
Sbjct: 8   RRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKA 66



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 28/46 (60%), Positives = 34/46 (73%)
 Frame = +1

Query: 418 TKLRAIWGXVXRPHGXSGXVRAKFXSNLPAXAMGXXIRVMLYPSRI 555
           T+ RAIWG + RPHG +G VRAKF  N+P  A+G  IRV+LYPS I
Sbjct: 79  TRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,974,590
Number of Sequences: 27780
Number of extensions: 110005
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)