Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_A16
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    56   9e-09

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 55.6 bits (128), Expect = 9e-09
 Identities = 26/55 (47%), Positives = 35/55 (63%)
 Frame = +2

Query: 173 NLRVAKVTGGVASKLSKIRVVXKAIARVYXVYHQKXKVXLRNHYKNKKYKPLXFK 337
           +LRV K+ GG  SKLSKI+   K IAR+  V ++  ++  R  YKNKKY PL  +
Sbjct: 29  SLRVQKIAGGSGSKLSKIKTTRKDIARILTVINESNRLAAREAYKNKKYIPLDLR 83



 Score = 32.3 bits (70), Expect = 0.094
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +3

Query: 369 LTKHEAKIKTRKEIRKKSLFPPRVYAVKA 455
           LT +E   KT K+I+K+  FP R YA+KA
Sbjct: 94  LTPYEQSRKTLKQIKKERYFPLRKYALKA 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,959
Number of Sequences: 5004
Number of extensions: 19353
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)