Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_A13
(1100 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 30 0.016
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 34 0.040
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.094
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.29
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.38
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.87
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 2.5
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.5
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 3.5
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.3 bits (65), Expect = 0.50
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 441 RXGDGGGRVXAXVXXGGGGRGXXGXGGGGGXXXGG 337
R G GGGR A GG RG G GG GG
Sbjct: 25 RGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -3
Query: 435 GDGGGRVXAXVXXGGGGRGXXGXGGGGGXXXGG 337
G GGR + GG G G GGG G GG
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGG 38
Score = 27.9 bits (59), Expect(2) = 0.016
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 621 GGEXGXGGXMGGGXGXEXXXXGXRGXGXGGG 529
GG G G GG G G RG GGG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGG 39
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -3
Query: 633 GXXXGGEXGXGGXMGGGXGXEXXXXGXRGXGXGG 532
G GG G G GG G G RG GG
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Frame = -3
Query: 663 GXXGLGXRSLGXXXGGEXGX----GGXMGGGXGXEXXXXGXRGXGXGG 532
G G G GG G GG GGG G G RG GG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGG 56
Score = 26.2 bits (55), Expect = 8.1
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = -1
Query: 389 GXGGGXGXXGXGGXXXGGXXTERGG--GEX*XGAXXTXGXXGXXXXGXGG 246
G GG G G GG RGG G GA G G G GG
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
Score = 26.2 bits (55), Expect = 8.1
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = -3
Query: 441 RXGDGGGRVXAXVXXGGGGRGXXG-XGGGGGXXXGG 337
R G GGR GG G G G GGG G GG
Sbjct: 11 RGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGG 46
Score = 26.2 bits (55), Expect = 8.1
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -3
Query: 663 GXXGLGXRSLGXXXGGEXGXGGXMGGGXGXEXXXXGXRGXGXGG 532
G G G G GG G G GG G G G G GG
Sbjct: 24 GRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSG-GRGG 66
Score = 26.2 bits (55), Expect(2) = 0.016
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 429 GGGRVXAXVXXGGGGRGXXGXGGGGGXXXG 340
GGGR A GG G G GG G G
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.9 bits (74), Expect = 0.040
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +2
Query: 530 PPPXPLPLXPXXNXSXPXPPPXSPPXPXSPPXXXP 634
PP P P S P PPP +PP P PP P
Sbjct: 1699 PPQMSAPTPPPPPMSVP-PPPSAPPMPAGPPSAPP 1732
Score = 32.3 bits (70), Expect = 0.12
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Frame = +1
Query: 244 SPPXPXXXXPXXPXVXXAPXHXSP----PPRSVXXPPXXXPPXPXXPXPPPXPSP 396
+P P P P P +P PP SV PP P P PP P P
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 31.9 bits (69), Expect = 0.16
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 527 TPPPXPLPLXPXXN-XSXPXPPPXSPPXPXSPPXXXPKLLXPNP 655
TPPP P+ + P + P PP +PP P P P + PNP
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPPL-PASSAPSV--PNP 1746
Score = 29.5 bits (63), Expect = 0.87
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Frame = +2
Query: 527 TPPPXPLPLXPXXNXSXPXPPPX---SPPXPXSPPXXXPKLLXPNPXXP 664
TPP P P S P PPP PP P +PP P P P
Sbjct: 1689 TPPVRPQSAAPP-QMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.7 bits (71), Expect = 0.094
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 298 PXHXSPP-PRSVXXPPXXXPPXPXXPXPPPXPSPXXHSR 411
P +PP P+S PP PP P P P P +P S+
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSK 163
Score = 30.7 bits (66), Expect = 0.38
Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Frame = +2
Query: 530 PPPXPLPLXPXXNXSXP----XPPPXSPPXPXSPPXXXPKLLXPNPXXP 664
PPP P P + + P PPP P P P P L P P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +2
Query: 533 PPXPLPLXPXXNXSXP-XPPPXSPPXPXSPPXXXPKLLXP 649
PP P L P + P PP +P P + P PK+ P
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/48 (29%), Positives = 15/48 (31%)
Frame = +2
Query: 530 PPPXPLPLXPXXNXSXPXPPPXSPPXPXSPPXXXPKLLXPNPXXPXXL 673
PP P P P P P P P P P + P P L
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSL 171
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Frame = +1
Query: 244 SPPXPXXXXPXXPXVXXAPXHXSPPPRSVXXP-PXXXPPXPXXPXPPPXPSP 396
S P P P P +PP S+ P P PP P P P P
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP 172
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Frame = +1
Query: 244 SPPXPXXXXPXXPXVXXAPXHXSPPPRSVXXPPXXX--PPXPXXPXPPPXPS 393
+P P P P PPP PP PP P PP P+
Sbjct: 127 APAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPA 178
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 338 PPXXXPPPPPXPXXPLPPPPXXT 406
P PPP P P P PP T
Sbjct: 3 PAPPPPPPAPAPAAAAPAPPLMT 25
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.29
Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Frame = +1
Query: 244 SPPXPXXXXPXXPXVXXAPXHXSPPPRSVXXPPXXXPP---XPXXPXPPPXPSP 396
SPP P P AP PP + PP PP P PPP P P
Sbjct: 731 SPPPPPPAV-IVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 30.7 bits (66), Expect = 0.38
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Frame = +2
Query: 527 TPPPXPLPLXPXXNXSXPXPPPXSPP-----XPXSPPXXXP 634
TP P P+P+ P PPP PP P PP P
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Frame = +2
Query: 530 PPPXPLPLXPXXNXS-XPXPPP----XSPPXPXSPPXXXPKLLXPNPXXP 664
PPP P + P + P PPP PP P PP P P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/48 (27%), Positives = 16/48 (33%)
Frame = +1
Query: 220 PXXXVXXFSPPXPXXXXPXXPXVXXAPXHXSPPPRSVXXPPXXXPPXP 363
P + P P P P + P PP + PP PP P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.38
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +2
Query: 530 PPPXPLPLXPXXNXSXPXPPPXSPPXPXSPPXXXP 634
PP P L P S P P +PP P S P P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 30.3 bits (65), Expect = 0.50
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Frame = +2
Query: 530 PPPXP-------LPLXPXXNXSXPXPPPXSPPXP-XSPPXXXPKLLXPNPXXP 664
PPP P +PL P + P PPP S P PP NP P
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391
Score = 29.5 bits (63), Expect = 0.87
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +2
Query: 530 PPPXPLPLXPXXNXSXPXPPPXSPPXPXSPPXXXPKLLXP 649
P P P+ P P PP P P PP P P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 536 PXPLPLXPXXNXSXPXPPPXSPPXPXSPPXXXPKL 640
P P P+ P N + PP SPP P +P P +
Sbjct: 251 PAPPPIPPPSNGTVSSPP-NSPPRPIAPVSMNPAI 284
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +1
Query: 244 SPPXPXXXXPXXPXVXXAPXHXSPPPRSVXXPPXXXPPXPXXPXPPPXPSP 396
+PP P P + + P P + P P P P PPP P+P
Sbjct: 435 APPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP---PLPPAAPAPPPAPAP 482
Score = 27.5 bits (58), Expect = 3.5
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Frame = +2
Query: 530 PPPXPLPLXPXX--NXSXPXPPPXSPPXPX---SPPXXXPKLLXPNPXXP 664
PP P P + S P PPP PP SPP P+ + P P
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282
Score = 26.2 bits (55), Expect = 8.1
Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Frame = +1
Query: 247 PPXPXXXXPXXPXVXXAPXHXS-----PPPRSVXXPPXXXPPXPXXPXPPPXP 390
PP P P + + S PPPRS PP PPP P
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.87
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Frame = +2
Query: 338 PPXXXPPPPP-----XPXXPLPPPP 397
PP PPPPP P P PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 587 PPXSPPXPXSPPXXXPKLLXPNPXXP 664
PP +PP P PP P P P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 535 PPXXPPXPXXXPLXPXPPPHXP 600
PP PP P P PPP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +2
Query: 530 PPPXPLPLXPXXNXS-XPXPPPXSPPXPXSPPXXXPKLLXPNPXXP 664
PPP P P + P PPP + P +P P + P P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237
Score = 28.3 bits (60), Expect = 2.0
Identities = 30/131 (22%), Positives = 32/131 (24%), Gaps = 7/131 (5%)
Frame = +1
Query: 250 PXPXXXXPXXPX----VXXAPXHXSPPPRSVXXPPXXXPPXPXXPXPPPXPSPXXHSRXD 417
P P P P V P PP V P PP P PP P P +
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPP--VPKPSVAAPPVPVPSGAPPVPKPSVAAPPV 1152
Query: 418 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXHPXPPXXPPXPXXXP---LXPXPP 588
A P PP P P + P PP
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Query: 589 PHXPPLXXLPS 621
P P PS
Sbjct: 1213 PSTAPPVPTPS 1223
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/45 (28%), Positives = 15/45 (33%)
Frame = +2
Query: 530 PPPXPLPLXPXXNXSXPXPPPXSPPXPXSPPXXXPKLLXPNPXXP 664
PPP P P + P P P PP P + P P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
Score = 27.5 bits (58), Expect = 3.5
Identities = 26/116 (22%), Positives = 32/116 (27%), Gaps = 7/116 (6%)
Frame = +2
Query: 338 PPXXXP---PPPPXPXXPLPPPPXXTXAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 508
PP P PP P P PP P + A
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171
Query: 509 XXXXXXTPP-PXP---LPLXPXXNXSXPXPPPXSPPXPXSPPXXXPKLLXPNPXXP 664
PP P P +P P + + P P P P PP P + P+ P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
Score = 27.5 bits (58), Expect = 3.5
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +1
Query: 244 SPPXPXXXXPXXPXVXXAPXHXSPPPRSVXXPPXXXPPXPXXPXPPPXPSP 396
+PP P P A PP S PP P P PPP +P
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGVPPVPPPS-EAPPVPKPSVGVPPVPPPSTAP 1217
Score = 27.1 bits (57), Expect = 4.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 338 PPXXXPPPPPXPXXPLPPPPXXT 406
PP PP P P LPP P T
Sbjct: 1211 PPPSTAPPVPTPSAGLPPVPVPT 1233
Score = 26.2 bits (55), Expect = 8.1
Identities = 16/59 (27%), Positives = 20/59 (33%)
Frame = +1
Query: 220 PXXXVXXFSPPXPXXXXPXXPXVXXAPXHXSPPPRSVXXPPXXXPPXPXXPXPPPXPSP 396
P V +PP P + +PPP V P P P PP P+P
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP--VPAPSSEIPSIPAPSGAPPVPAP 1088
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/46 (26%), Positives = 17/46 (36%)
Frame = +2
Query: 527 TPPPXPLPLXPXXNXSXPXPPPXSPPXPXSPPXXXPKLLXPNPXXP 664
T PP P+P P +PP +P P + P+ P
Sbjct: 1039 TAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP 1084
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.0 bits (47), Expect(2) = 2.5
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +1
Query: 526 HPXPPXXPPXPXXXPLXPXPPP 591
HP PP PP P L P
Sbjct: 904 HPTPPPPPPLPVKTSLNTFSHP 925
Score = 23.0 bits (47), Expect(2) = 2.5
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +1
Query: 568 PLXPXPPPHXPPL 606
P P PPP PPL
Sbjct: 942 PAFPPPPPPPPPL 954
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 3.5
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -3
Query: 435 GDGGGRVXAXVXXGGGGRGXXGXGGGGGXXXGG 337
G GGG GG G G G GGG G GG
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
Score = 26.6 bits (56), Expect = 6.1
Identities = 29/106 (27%), Positives = 30/106 (28%), Gaps = 1/106 (0%)
Frame = -3
Query: 654 GLGXRSLGXXXGGEXGXGGXMGG-GXGXEXXXXGXRGXGXGGGVXXXXXXXXXXXXXXXX 478
GL +LG GG GG G G G G G GG
Sbjct: 170 GLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
Query: 477 XXXXXXXXVXDXRXGDGGGRVXAXVXXGGGGRGXXGXGGGGGXXXG 340
G GGG GG G G G GGG G G
Sbjct: 230 PGGFEGGPG-----GFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -3
Query: 441 RXGDGGGRVXAXVXXGGGGRGXXGXGGGGGXXXG 340
R G GGR + GG RG G G GG G
Sbjct: 140 RGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.144 0.518
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,098,699
Number of Sequences: 5004
Number of extensions: 13176
Number of successful extensions: 380
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 581717144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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