Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_A10
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    32   0.13 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   4.7  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    26   6.3  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   8.3  

>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +1

Query: 271 SIIQNVVNNLIIDKRRNXMEYCYKLWVGNGXEIVRKYFPLNFR--THHGRKLCXDHLQK 441
           +II   V+N I+D+  +  ++C ++W G   + +R ++   ++  +H   K    H+++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYSNLYKKLSHRDAKSIYHHVRR 305


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 172 NQDLEEXLYNSILTGDYDSAVRQSLE 249
           + DLE+ +  ++LTGD  SAV+  LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 124 MLAASAGVV--ELSADTSNQDLEEXLYNSILTGDYDSAVRQSLEYESXGXGSII 279
           ++ A+AG+    LS +  N+D+   +    L G Y +A      ++  G GS+I
Sbjct: 91  VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 274 IIQNVVNNLIIDKRRNXMEYCYKLWVGNGXEIVR 375
           +++++  NL I    N +EY   LW  NG  I +
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,482
Number of Sequences: 5004
Number of extensions: 46285
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)