Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_A08
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0904 + 20717005-20718087                                         31   1.6  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    29   6.6  
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307...    28   8.7  

>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -2

Query: 436 PA*XPMTFHPRPSYATPSPPTQKXYPMXPQPKEXXY 329
           P   P T  P P   TP+PPT    P  P+P    Y
Sbjct: 91  PTPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTY 126


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 424 PMTFHPRPSYATPSPPTQKXYPMXPQ 347
           P   +P P   TPSPP    YP  P+
Sbjct: 429 PPVVYPSPPEVTPSPPEIAPYPSPPE 454



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 424 PMTFHPRPSYATPSPPTQKXYPMXPQ 347
           P   +P P   TPSPP    YP  P+
Sbjct: 553 PPIIYPSPPEVTPSPPEITPYPSPPE 578


>12_02_0280 -
           16729000-16729678,16729948-16730039,16730072-16730772,
           16731033-16731144,16731961-16731970,16732954-16733663
          Length = 767

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 120 YTSSXPRLIEKXXLSVDFPVCSRDCWGAVP 209
           YT   P+L EK  L+ DF  C + C GA+P
Sbjct: 652 YTHRFPKL-EKFILACDFLPCLKFCIGAMP 680


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,939,227
Number of Sequences: 37544
Number of extensions: 230533
Number of successful extensions: 768
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)