Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_A04
         (880 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC038446-1|AAH38446.1|  673|Homo sapiens SF1 protein protein.          28   2.4  
BC100766-1|AAI00767.1|  180|Homo sapiens Xg blood group protein.       31   4.2  
U82130-1|AAC52083.1|  390|Homo sapiens tumor susceptibility prot...    31   7.3  
BC002487-1|AAH02487.1|  390|Homo sapiens tumor susceptibility ge...    31   7.3  

>BC038446-1|AAH38446.1|  673|Homo sapiens SF1 protein protein.
          Length = 673

 Score = 28.3 bits (60), Expect(2) = 2.4
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +1

Query: 766 PPPXPXPPXPSAAXXRXSXPPRRVLXXSXXXRXPRP 873
           PPP P PP P A+      PP   L        P P
Sbjct: 83  PPPPPPPPSPGASYPPPQPPPPPPLYQRVSPPQPPP 118



 Score = 22.6 bits (46), Expect(2) = 2.4
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 733 AVXVLGALXXSPPPXPXPP 789
           A     AL   PPP P PP
Sbjct: 61  AAFPFAALPPPPPPPPPPP 79


>BC100766-1|AAI00767.1|  180|Homo sapiens Xg blood group protein.
          Length = 180

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
 Frame = +3

Query: 138 MANAQDPVRVVENADSVVINDPDP-FFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYE 314
           +A+A D     +  +S +   P P ++ QP   N    I  RP    P     P  +G  
Sbjct: 27  LADALDDPEPTKKPNSDIYPKPKPPYYPQPENPNSGGNIYPRP---KPRPQPQPGNSG-- 81

Query: 315 PIDNGAYY--VDRPQGRPYFKPTPFPGARGG 401
             ++G Y+  VDR  GR   +P P P A GG
Sbjct: 82  --NSGGYFNDVDRDDGRYPPRPRPRPPAGGG 110


>U82130-1|AAC52083.1|  390|Homo sapiens tumor susceptibility protein
           protein.
          Length = 390

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
 Frame = +3

Query: 186 VVINDPDPFFAQPTVGNGYEPID-----NRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRP 350
           VV  D  P F++P +   Y P       N  Y+   P   +P  +GY P  +G      P
Sbjct: 133 VVFGDEPPVFSRP-ISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYP 191

Query: 351 QGRPY 365
            G PY
Sbjct: 192 PGGPY 196


>BC002487-1|AAH02487.1|  390|Homo sapiens tumor susceptibility gene
           101 protein.
          Length = 390

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
 Frame = +3

Query: 186 VVINDPDPFFAQPTVGNGYEPID-----NRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRP 350
           VV  D  P F++P +   Y P       N  Y+   P   +P  +GY P  +G      P
Sbjct: 133 VVFGDEPPVFSRP-ISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYP 191

Query: 351 QGRPY 365
            G PY
Sbjct: 192 PGGPY 196


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,173,670
Number of Sequences: 237096
Number of extensions: 1986799
Number of successful extensions: 17458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16625
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)