Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_P24
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AL110484-10|CAB54401.1|  237|Caenorhabditis elegans Hypothetical...    28   7.8  

>Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical
           protein T10G3.2 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -1

Query: 324 HH*KSLCCNRLYRRVHRRSVPKCRRPSLLPFSCPT 220
           H    +CCN L RR  RRS P    P   P S  T
Sbjct: 281 HRFSQMCCNSLRRRPVRRSHPISPSPGTSPSSVVT 315


>Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical
           protein F08A10.2 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -2

Query: 227 VPRDVTGVSL*K*ASDGVFFFVIRRPVYFCVYTHQDCSDEKQQF---GIHFELFVVW 66
           +P  V G+SL   ++  +F   I  P+Y  VY + D +D+   F     HF   + W
Sbjct: 10  IPNTVAGISLFIFSAIYLFSLFIMFPIYVYVYRYNDKNDKMALFHPITSHFYKMIKW 66


>AL110484-10|CAB54401.1|  237|Caenorhabditis elegans Hypothetical
           protein Y38E10A.10 protein.
          Length = 237

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 180 IRGLF-SKRHPRDVTWDTKMGGGKVFGTLGQNDD 278
           + GL+ + R  +D+  +T   G KVF   G+NDD
Sbjct: 155 VNGLWCASRFIKDINEETHYEGSKVFSIYGRNDD 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,771,514
Number of Sequences: 27780
Number of extensions: 331255
Number of successful extensions: 756
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)