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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_P23
         (922 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical pr...    33   0.38 
V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein ( Caeno...    33   0.38 
J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein ( C.ele...    33   0.38 
AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen stru...    33   0.38 
AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical ...    33   0.38 
Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical pr...    32   0.66 
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    31   0.88 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    31   0.88 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    31   0.88 
Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81525-6|CAB82206.2|  346|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z54238-5|CAA90997.1|  299|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z54238-3|CAA90995.1|  299|Caenorhabditis elegans Hypothetical pr...    30   2.7  
AY347576-1|AAP97870.1|  299|Caenorhabditis elegans COLlagen stru...    30   2.7  
AY347574-1|AAP97868.1|  299|Caenorhabditis elegans COLlagen stru...    30   2.7  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical pr...    29   4.7  
X64435-1|CAA45773.1|  318|Caenorhabditis elegans collagen protein.     29   4.7  
V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein ( Caeno...    29   4.7  
U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter...    29   4.7  
U41624-3|AAF99944.1|  318|Caenorhabditis elegans Dumpy : shorter...    29   4.7  
J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein ( C.ele...    29   4.7  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    29   6.2  
AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen prot...    29   6.2  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    29   6.2  
AC024775-6|AAK68452.2|  304|Caenorhabditis elegans Collagen prot...    29   6.2  
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    28   8.2  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    28   8.2  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    28   8.2  

>Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical
           protein W01B6.7 protein.
          Length = 301

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 812 PGXPKGPXGPXSSXXPPXPXXYPVAPXPP 898
           PG P GP GP     PP P   P +P  P
Sbjct: 151 PGGPPGPAGPAGPPGPPGPDGNPGSPAGP 179


>V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-2 coding for a collagen.
           ).
          Length = 301

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 812 PGXPKGPXGPXSSXXPPXPXXYPVAPXPP 898
           PG P GP GP     PP P   P +P  P
Sbjct: 151 PGGPPGPAGPAGPPGPPGPDGNPGSPAGP 179


>J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 2 (col-2) gene, complete
           cds. ).
          Length = 301

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 812 PGXPKGPXGPXSSXXPPXPXXYPVAPXPP 898
           PG P GP GP     PP P   P +P  P
Sbjct: 151 PGGPPGPAGPAGPPGPPGPDGNPGSPAGP 179


>AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen
           structural gene, probabledorsal and ventral cuticle
           component, from embryo to adult,but maximal in dauer
           (28.0 kD) (col-2) protein.
          Length = 301

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 812 PGXPKGPXGPXSSXXPPXPXXYPVAPXPP 898
           PG P GP GP     PP P   P +P  P
Sbjct: 151 PGGPPGPAGPAGPPGPPGPDGNPGSPAGP 179


>AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical
           protein Y64G10A.1 protein.
          Length = 302

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 118 CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 273
           CA +  A ++LNY RT L+    +NC     P TT + +  A N    + AP
Sbjct: 38  CATTCGACSNLNYTRTCLSD-GLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88


>Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical
           protein H06A10.2 protein.
          Length = 305

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +2

Query: 809 PPGXPKGPXGPXSSXXPPXPXXYPVAPXPPXXTDXP 916
           PPG P GP GP     P      P AP PP     P
Sbjct: 159 PPGPP-GPDGPAGPAGPDGEAGSPAAPSPPGPPGPP 193


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
 Frame = +2

Query: 710 PAPPSTKXHRPGSSXXNRPIQXCXGTSVXT-LXXPPGXPKG-PXGPXSSXXPPXPXXYPV 883
           P PP  K   P +   + P     G+        PP  P G P  P +   PP P     
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 297

Query: 884 APXPPXXTDXPT 919
            P PP     PT
Sbjct: 298 PPPPPPRGSPPT 309


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
 Frame = +2

Query: 710 PAPPSTKXHRPGSSXXNRPIQXCXGTSVXT-LXXPPGXPKG-PXGPXSSXXPPXPXXYPV 883
           P PP  K   P +   + P     G+        PP  P G P  P +   PP P     
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 318

Query: 884 APXPPXXTDXPT 919
            P PP     PT
Sbjct: 319 PPPPPPRGSPPT 330


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
 Frame = +2

Query: 710 PAPPSTKXHRPGSSXXNRPIQXCXGTSVXT-LXXPPGXPKG-PXGPXSSXXPPXPXXYPV 883
           P PP  K   P +   + P     G+        PP  P G P  P +   PP P     
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 303

Query: 884 APXPPXXTDXPT 919
            P PP     PT
Sbjct: 304 PPPPPPRGSPPT 315


>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical
           protein F54B11.2 protein.
          Length = 304

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 809 PPGXPKGPXGPXSSXXPPXPXXYPVAPXPP 898
           PPG P GP GP     P      P AP PP
Sbjct: 158 PPGPP-GPDGPAGPAGPDGEAGSPAAPSPP 186


>Z81525-6|CAB82206.2|  346|Caenorhabditis elegans Hypothetical
           protein F33A8.9 protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 809 PPGXPKGPXGPXSSXXPPXPXXYPVAPXPPXXTDXP 916
           PPG P GP GP  +  P  P  + +   PP     P
Sbjct: 209 PPGPP-GPKGPRGTPGPTGPKNFYITSGPPGPPGPP 243


>Z54238-5|CAA90997.1|  299|Caenorhabditis elegans Hypothetical
           protein T28C6.6 protein.
          Length = 299

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/69 (26%), Positives = 24/69 (34%)
 Frame = +2

Query: 710 PAPPSTKXHRPGSSXXNRPIQXCXGTSVXTLXXPPGXPKGPXGPXSSXXPPXPXXYPVAP 889
           P+ P+     PG+    +P Q      +      P  P GP GP  +   P     P AP
Sbjct: 188 PSGPNGNPGAPGAP--GQPGQDAPSEPITPGAPGPAGPAGPQGPPGAPGQPGHDGQPGAP 245

Query: 890 XPPXXTDXP 916
            P      P
Sbjct: 246 GPKGPNGNP 254


>Z54238-3|CAA90995.1|  299|Caenorhabditis elegans Hypothetical
           protein T28C6.4 protein.
          Length = 299

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/69 (26%), Positives = 24/69 (34%)
 Frame = +2

Query: 710 PAPPSTKXHRPGSSXXNRPIQXCXGTSVXTLXXPPGXPKGPXGPXSSXXPPXPXXYPVAP 889
           P+ P+     PG+    +P Q      +      P  P GP GP  +   P     P AP
Sbjct: 188 PSGPNGNPGAPGAP--GQPGQDAPSEPITPGAPGPAGPAGPQGPPGAPGQPGHDGQPGAP 245

Query: 890 XPPXXTDXP 916
            P      P
Sbjct: 246 GPKGPNGNP 254


>AY347576-1|AAP97870.1|  299|Caenorhabditis elegans COLlagen
           structural gene, probablecuticle component, from embryo
           to adult (28.7 kD) (col-3) protein.
          Length = 299

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/69 (26%), Positives = 24/69 (34%)
 Frame = +2

Query: 710 PAPPSTKXHRPGSSXXNRPIQXCXGTSVXTLXXPPGXPKGPXGPXSSXXPPXPXXYPVAP 889
           P+ P+     PG+    +P Q      +      P  P GP GP  +   P     P AP
Sbjct: 188 PSGPNGNPGAPGAP--GQPGQDAPSEPITPGAPGPAGPAGPQGPPGAPGQPGHDGQPGAP 245

Query: 890 XPPXXTDXP 916
            P      P
Sbjct: 246 GPKGPNGNP 254


>AY347574-1|AAP97868.1|  299|Caenorhabditis elegans COLlagen
           structural gene, probablecuticle component, from embryo
           to adult (28.7 kD) (col-117) protein.
          Length = 299

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/69 (26%), Positives = 24/69 (34%)
 Frame = +2

Query: 710 PAPPSTKXHRPGSSXXNRPIQXCXGTSVXTLXXPPGXPKGPXGPXSSXXPPXPXXYPVAP 889
           P+ P+     PG+    +P Q      +      P  P GP GP  +   P     P AP
Sbjct: 188 PSGPNGNPGAPGAP--GQPGQDAPSEPITPGAPGPAGPAGPQGPPGAPGQPGHDGQPGAP 245

Query: 890 XPPXXTDXP 916
            P      P
Sbjct: 246 GPKGPNGNP 254


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 25/78 (32%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
 Frame = +2

Query: 680 ADSXRDPWFFPAPPSTKXHRP-GSSXXNRPIQXCXGTSVXTLXXPPGXPKGPXGPXSSXX 856
           A + + PW  P  P    H+  G    NR  Q            PPG P GP GP     
Sbjct: 43  AQNHQLPWHQPRHPGPPAHQDWGDWSANRDEQW---------RGPPG-PSGPSGPPVYHN 92

Query: 857 PPXPXXYPVAPXPPXXTD 910
              P  YP  P PP   D
Sbjct: 93  QGPPRGYP--PPPPQGAD 108


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +3

Query: 813  RDXPKAPXGPXPPXXPPXXXXTXWPPXPLXKPT 911
            R    +P  P PP  PP    T  PP P   PT
Sbjct: 1332 RSSSPSPPPPPPPPPPPSDDLTPVPPPPPPPPT 1364


>Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical
           protein F23H12.4 protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
 Frame = +2

Query: 710 PAPPSTKXHRP---GSSXXNRPIQXCXGTSVXTLXXP---PGXPKGPXGPXSSXXPPXPX 871
           P PP  +  R    G      P   C G  +     P   PG P  P  P +   P  P 
Sbjct: 73  PVPPRNRTTRQAYGGPEVNPAPNLQCEGCCLPGPPGPAGAPGKPGKPGRPGAPGTPGTPG 132

Query: 872 XYPVAPXPP 898
             PVAP  P
Sbjct: 133 KPPVAPCEP 141


>X64435-1|CAA45773.1|  318|Caenorhabditis elegans collagen protein.
          Length = 318

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
 Frame = +2

Query: 782 GTSVXTLXXPPGX--PKGPXG----PXSSXXPPXPXXYPVAPXPPXXTDXP 916
           GT +     PPG   PKGP G    P  +  PP P      P PP     P
Sbjct: 210 GTGIKGPPGPPGPRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGPRGEP 260


>V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-1 coding for a collagen.
           ).
          Length = 296

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
 Frame = +2

Query: 710 PAPPSTKXHRP---GSSXXNRPIQXCXGTSVXTLXXP---PGXPKGPXGPXSSXXPPXPX 871
           P PP  +  R    G      P   C G  +     P   PG P  P  P +   P  P 
Sbjct: 68  PVPPRNRTTRQAYGGPEVNPAPNLQCEGCCLPGPPGPAGAPGKPGKPGRPGAPGTPGTPG 127

Query: 872 XYPVAPXPP 898
             PVAP  P
Sbjct: 128 KPPVAPCEP 136


>U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 3 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +2

Query: 809 PPGXPKGPXGPXSSXXPPXPXXYPVAPXPPXXTDXP 916
           PPG P GP GP     PP     P    PP     P
Sbjct: 226 PPGPP-GPPGPQGPPGPPGKDGQPGKAGPPGLPGDP 260


>U41624-3|AAF99944.1|  318|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 7 protein.
          Length = 318

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
 Frame = +2

Query: 782 GTSVXTLXXPPGX--PKGPXG----PXSSXXPPXPXXYPVAPXPPXXTDXP 916
           GT +     PPG   PKGP G    P  +  PP P      P PP     P
Sbjct: 210 GTGIKGPPGPPGPRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGPRGEP 260


>J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 1 (col-1) gene, complete
           cds. ).
          Length = 296

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
 Frame = +2

Query: 710 PAPPSTKXHRP---GSSXXNRPIQXCXGTSVXTLXXP---PGXPKGPXGPXSSXXPPXPX 871
           P PP  +  R    G      P   C G  +     P   PG P  P  P +   P  P 
Sbjct: 68  PVPPRNRTTRQAYGGPEVNPAPNLQCEGCCLPGPPGPAGAPGKPGKPGRPGAPGTPGTPG 127

Query: 872 XYPVAPXPP 898
             PVAP  P
Sbjct: 128 KPPVAPCEP 136


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -3

Query: 521 CLXTPSDVGNSXIRGIGCGTELQS--EVVVSVN-DLDIVSGHDESKV*WEVLSNNFLSVA 351
           C   P       + G GCG + +S  +V   +N D D+   ++E +   EVL NN  S  
Sbjct: 49  CAPPPPPPPPPPMCGCGCGRKKRSVDDVEGVINMDSDVECNNEELR---EVLENNMKSTP 105

Query: 350 DPQLVAVLHGVPS 312
              LV+V   +P+
Sbjct: 106 SDSLVSVRSNLPT 118


>AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen protein
           69 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 821 PKGPXGPXSSXXPPXPXXYPVAPXPPXXTDXP 916
           P+GP GP  +  P  P   P  P  P  T  P
Sbjct: 185 PQGPQGPPGAVGPCGPSGIPGLPGNPGYTSPP 216


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +2

Query: 809 PPGXPKGPXGPXSSXXPPXPXXYPVAPXPP 898
           P G P  P  P +   PP P   P  P PP
Sbjct: 119 PGGVPAPPNPPRTCCPPPTPAAPPPPPPPP 148


>AC024775-6|AAK68452.2|  304|Caenorhabditis elegans Collagen protein
           108 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/69 (26%), Positives = 23/69 (33%)
 Frame = +2

Query: 710 PAPPSTKXHRPGSSXXNRPIQXCXGTSVXTLXXPPGXPKGPXGPXSSXXPPXPXXYPVAP 889
           PA P+     PGS    +P +      +      P  P GP GP  +   P     P  P
Sbjct: 193 PAGPNGNPGAPGSP--GKPGEDGKSEPITPGAPGPAGPPGPQGPPGAPGQPGHDGQPGTP 250

Query: 890 XPPXXTDXP 916
            P      P
Sbjct: 251 GPKGPNGNP 259


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 176 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 286
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 176 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 286
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 176 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 286
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,921,221
Number of Sequences: 27780
Number of extensions: 367554
Number of successful extensions: 2571
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2368
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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