Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_P21
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical ...    33   0.36 
AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    28   7.8  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    28   7.8  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    28   7.8  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    28   7.8  

>AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical
           protein Y64G10A.1 protein.
          Length = 302

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 109 CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 264
           CA +  A ++LNY RT L+    +NC     P TT + +  A N    + AP
Sbjct: 38  CATTCGACSNLNYTRTCLSD-GLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88


>AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical
           protein K08D9.5 protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +3

Query: 399 AGNYVKIIYRNYNLALKLGSTTNPSNEXIAYGDGVXQHTELXSWKFITLWENNXVYFXIH 578
           A   +KII   Y++   L  T N ++  I   D    HT + + +FIT  ++N V F ++
Sbjct: 57  ANTMIKIIQNEYSIDSLL-ETDNETSALIETLD--VSHTFIEAAEFITFLDSNDVLFPVN 113

Query: 579 XTKYNQ 596
              Y Q
Sbjct: 114 YPTYTQ 119


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 372 FPLNFRLIMAGNYVKIIYRNYNLALKLGS-TTNPSNEXIAYGDG 500
           FP+N+  I + NY+     +YN+ LK     T+  N+ +   DG
Sbjct: 317 FPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDG 360


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 167 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 277
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 167 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 277
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 167 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 277
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = -3

Query: 470 GIGCGTELQS--EVVVSVN-DLDIVSGHDESKV*WEVLSNNFLSVADPQLVAVLHGVPS 303
           G GCG + +S  +V   +N D D+   ++E +   EVL NN  S     LV+V   +P+
Sbjct: 63  GCGCGRKKRSVDDVEGVINMDSDVECNNEELR---EVLENNMKSTPSDSLVSVRSNLPT 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,784,044
Number of Sequences: 27780
Number of extensions: 319465
Number of successful extensions: 932
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)