Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_P20
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456...    30   2.0  
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    29   4.7  
04_03_0232 - 13049649-13052807                                         29   4.7  

>11_01_0572 +
           4565353-4565535,4566856-4567095,4567922-4568086,
           4568612-4568887
          Length = 287

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -3

Query: 620 SXVLIFKYWLYLVLWIXKYTLXFSHKGNELPTDEFSMLVYTI 495
           S V +F  W+YL+ W+ ++TL ++     L T  F+++V  I
Sbjct: 60  SWVFLFLLWVYLLNWVRRFTLTYTDGSIWLTT--FAVMVSAI 99


>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -1

Query: 301 LSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSST 137
           L+++ L+   W + P   L     + S      L  SP   +  SF S +    S D++T
Sbjct: 36  LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95

Query: 136 TPALAASMHIANTTR 92
            P   A+  +A TTR
Sbjct: 96  VPTTTAAARVAATTR 110


>04_03_0232 - 13049649-13052807
          Length = 1052

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -1

Query: 187 YSFSSRSWLEVSADSSTTPALAASMHIANTTRSFILLGAFQIAFKSANQILRNSL 23
           +  SS+ W   +   STT    A++ +     SF +  A  +  KS++ ILR  +
Sbjct: 288 FGLSSKEWRHTNRWISTTHQYVATVKVPPQATSFFVTEAGSLIDKSSSMILRGDM 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,825,470
Number of Sequences: 37544
Number of extensions: 391713
Number of successful extensions: 1006
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)