Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_P18
(862 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 39 0.005
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 39 0.005
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 39 0.005
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 36 0.049
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 0.80
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.1
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 1.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 1.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 1.8
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 30 1.8
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 30 2.4
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 4.3
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 29 5.6
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 29 5.6
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 28 7.4
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 28 7.4
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 28 9.8
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 28 9.8
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 38.7 bits (86), Expect = 0.005
Identities = 31/102 (30%), Positives = 31/102 (30%)
Frame = +2
Query: 353 GPPXKKGXXPKNXXXXXXXXXXNFXPXXGGPPPPXKGGXXXGXXXPPXGXKKKXXPPPPF 532
GPP G P P GGPPPP G PP PPPP
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPG-----GLPPISGGPPPPPPPP- 765
Query: 533 XXXSXXXXXXGXKKXFPXPPXXXXXGGXXFXGPLPPXPPXXF 658
P PP GG GP PP PP F
Sbjct: 766 -------------GGCPPPPPPPPPGGFK-GGPPPPPPPGMF 793
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 38.7 bits (86), Expect = 0.005
Identities = 31/102 (30%), Positives = 31/102 (30%)
Frame = +2
Query: 353 GPPXKKGXXPKNXXXXXXXXXXNFXPXXGGPPPPXKGGXXXGXXXPPXGXKKKXXPPPPF 532
GPP G P P GGPPPP G PP PPPP
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPG-----GLPPISGGPPPPPPPP- 765
Query: 533 XXXSXXXXXXGXKKXFPXPPXXXXXGGXXFXGPLPPXPPXXF 658
P PP GG GP PP PP F
Sbjct: 766 -------------GGCPPPPPPPPPGGFK-GGPPPPPPPGMF 793
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 38.7 bits (86), Expect = 0.005
Identities = 31/102 (30%), Positives = 31/102 (30%)
Frame = +2
Query: 353 GPPXKKGXXPKNXXXXXXXXXXNFXPXXGGPPPPXKGGXXXGXXXPPXGXKKKXXPPPPF 532
GPP G P P GGPPPP G PP PPPP
Sbjct: 295 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPG-----GLPPISGGPPPPPPPP- 348
Query: 533 XXXSXXXXXXGXKKXFPXPPXXXXXGGXXFXGPLPPXPPXXF 658
P PP GG GP PP PP F
Sbjct: 349 -------------GGCPPPPPPPPPGGFK-GGPPPPPPPGMF 376
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 35.5 bits (78), Expect = 0.049
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = +1
Query: 322 KKIPXKXXXIGPPXXKRXXPXKPXXGXXPPPXQFFXGXXGXPSPPXGG 465
+ IP I PP P P G PPP F G P P GG
Sbjct: 56 QSIPKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGG 103
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.5 bits (68), Expect = 0.80
Identities = 23/70 (32%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Frame = +2
Query: 428 PXXGGPPPPXKGGXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKK-XFPXPPXXXX 604
P GPPPP G G PP G PPPP + G P P
Sbjct: 406 PGGYGPPPPG-GPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPPPGAAGA 464
Query: 605 XGGXXF-XGP 631
GG F GP
Sbjct: 465 PGGNPFARGP 474
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/77 (25%), Positives = 23/77 (29%)
Frame = +2
Query: 440 GPPPPXKGGXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKKXFPXPPXXXXXGGXX 619
G PPP +G G PP G + P F + F PP
Sbjct: 319 GAPPP-QGAPQQGFGAPPQGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGN 377
Query: 620 FXGPLPPXPPXXFLLRP 670
F P PP F P
Sbjct: 378 FAPPPQSGPPGAFAPPP 394
Score = 27.9 bits (59), Expect = 9.8
Identities = 28/123 (22%), Positives = 32/123 (26%), Gaps = 2/123 (1%)
Frame = +1
Query: 253 PXGGGPXKFXGPGXPQGEKKXXXKKIPXKXXXIGPPXXKRXXPXK--PXXGXXPPPXQFF 426
P GG P G PQ + + P + P PPP F
Sbjct: 339 PQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAF- 397
Query: 427 XGXXGXPSPPXGGGAXXXXTXXXXGXKKXXAPPPXXXGLXXXXXXGXKKXFPXPPXGXXX 606
G P P G G G PP G G + PP G
Sbjct: 398 ----GAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPP 453
Query: 607 GGA 615
GA
Sbjct: 454 VGA 456
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/80 (27%), Positives = 23/80 (28%), Gaps = 6/80 (7%)
Frame = +2
Query: 437 GGPPPPXKGGXXXGXXXPPXGXKKKXXPPP-PFXXXSXXXXXXGXKKXFPXPP-----XX 598
GGPPPP P G PPP F G P P
Sbjct: 365 GGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYG 424
Query: 599 XXXGGXXFXGPLPPXPPXXF 658
GG GP PP P +
Sbjct: 425 PPQGGPGGFGPPPPGGPGAY 444
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = +2
Query: 443 PPPPXKGGXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKKXFPXPPXXXXXGGXXF 622
PPPP KG P PPPP S G P PP
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPP-RTGSPPPPPTGSP---PPPPAGGSPPPPRA 294
Query: 623 XGPLPPXPP 649
P PP PP
Sbjct: 295 GSPPPPPPP 303
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/72 (29%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Frame = +1
Query: 253 PXGGGPXKFXGPGXPQGEKKXXXKKIPXKXXXIG-PPXXKRXXPXKPXXGXXPPPXQFFX 429
P G P P P+G P G PP + P P G PPP
Sbjct: 232 PPAGSPPP---PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP---- 284
Query: 430 GXXGXPSPPXGG 465
G P PP G
Sbjct: 285 -AGGSPPPPRAG 295
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 428 PXXGGPPPPXKGGXXXGXXXPPXGXKKKXXPPPP 529
P G PPPP G P PPPP
Sbjct: 259 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = +2
Query: 428 PXXGGPPPPXKGGXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKKXFPXPP 592
P GG PPP + G PP G PPP S G P PP
Sbjct: 283 PPAGGSPPPPRAGSPP-PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSP---PPPP 333
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = +2
Query: 443 PPPPXKGGXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKKXFPXPPXXXXXGGXXF 622
PPPP KG P PPPP S G P PP
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPP-RTGSPPPPPTGSP---PPPPAGGSPPPPRA 315
Query: 623 XGPLPPXPP 649
P PP PP
Sbjct: 316 GSPPPPPPP 324
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/72 (29%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Frame = +1
Query: 253 PXGGGPXKFXGPGXPQGEKKXXXKKIPXKXXXIG-PPXXKRXXPXKPXXGXXPPPXQFFX 429
P G P P P+G P G PP + P P G PPP
Sbjct: 253 PPAGSPPP---PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP---- 305
Query: 430 GXXGXPSPPXGG 465
G P PP G
Sbjct: 306 -AGGSPPPPRAG 316
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 428 PXXGGPPPPXKGGXXXGXXXPPXGXKKKXXPPPP 529
P G PPPP G P PPPP
Sbjct: 280 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = +2
Query: 428 PXXGGPPPPXKGGXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKKXFPXPP 592
P GG PPP + G PP G PPP S G P PP
Sbjct: 304 PPAGGSPPPPRAGSPP-PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSP---PPPP 354
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = +2
Query: 443 PPPPXKGGXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKKXFPXPPXXXXXGGXXF 622
PPPP KG P PPPP S G P PP
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPP-RTGSPPPPPTGSP---PPPPAGGSPPPPRA 300
Query: 623 XGPLPPXPP 649
P PP PP
Sbjct: 301 GSPPPPPPP 309
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/72 (29%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Frame = +1
Query: 253 PXGGGPXKFXGPGXPQGEKKXXXKKIPXKXXXIG-PPXXKRXXPXKPXXGXXPPPXQFFX 429
P G P P P+G P G PP + P P G PPP
Sbjct: 238 PPAGSPPP---PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP---- 290
Query: 430 GXXGXPSPPXGG 465
G P PP G
Sbjct: 291 -AGGSPPPPRAG 301
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 428 PXXGGPPPPXKGGXXXGXXXPPXGXKKKXXPPPP 529
P G PPPP G P PPPP
Sbjct: 265 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = +2
Query: 428 PXXGGPPPPXKGGXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKKXFPXPP 592
P GG PPP + G PP G PPP S G P PP
Sbjct: 289 PPAGGSPPPPRAGSPP-PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSP---PPPP 339
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.7 bits (66), Expect = 1.4
Identities = 28/104 (26%), Positives = 32/104 (30%), Gaps = 12/104 (11%)
Frame = +1
Query: 253 PXGGGPXKFXG--PGXPQGEKKXXXKK------IPXKXXX--IGPPXXKRXXPXK--PXX 396
P GGP F G PG +G + P + +GP P P
Sbjct: 1497 PMRGGPPMFRGGPPGPGRGMPSPMMRGSSMRGGFPQRGGGPGMGPSQYYHDSPQNRGPPM 1556
Query: 397 GXXPPPXQFFXGXXGXPSPPXGGGAXXXXTXXXXGXKKXXAPPP 528
G PPP G G P PP GG G PP
Sbjct: 1557 GGLPPPHGGMNGWRGGPPPPRGGSHCQGPPPLMGGPPPRLGMPP 1600
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 437 GGPPPPXKGGXXXGXXXPPXGXKKKXXPPPP 529
GGPPPP G G G + PPP
Sbjct: 1571 GGPPPPRGGSHCQGPPPLMGGPPPRLGMPPP 1601
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/69 (28%), Positives = 20/69 (28%)
Frame = +2
Query: 443 PPPPXKGGXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKKXFPXPPXXXXXGGXXF 622
PP P G PP PPPP G P PP G
Sbjct: 275 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPG----MPPPPPPSRFGPPGM 330
Query: 623 XGPLPPXPP 649
G PP PP
Sbjct: 331 GGMPPPPPP 339
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/69 (28%), Positives = 20/69 (28%)
Frame = +2
Query: 443 PPPPXKGGXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKKXFPXPPXXXXXGGXXF 622
PP P G PP PPPP G P PP G
Sbjct: 285 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPG----MPPPPPPSRFGPPGM 340
Query: 623 XGPLPPXPP 649
G PP PP
Sbjct: 341 GGMPPPPPP 349
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 649 GGXGGXGXPKXXPPPXXXPGGGGEXFFXXP 560
GG GG G PPP GGGG + P
Sbjct: 22 GGGGGCGCAPPPPPPACGCGGGGGGYAAPP 51
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/62 (33%), Positives = 22/62 (35%)
Frame = +1
Query: 283 GPGXPQGEKKXXXKKIPXKXXXIGPPXXKRXXPXKPXXGXXPPPXQFFXGXXGXPSPPXG 462
GP PQG K P K G P P +P PPP Q G P PP
Sbjct: 93 GPQGPQGTPGKPGK--PGKPGAPGQPGTPGRPPQQPCEPTTPPPCQ--PCPQGPPGPPGQ 148
Query: 463 GG 468
G
Sbjct: 149 PG 150
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 29.1 bits (62), Expect = 4.3
Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Frame = +1
Query: 283 GPGXPQGEKKXXXKKIPXKXXXIGPPXXKRXXPXKPXXGXXPPPXQ-FFXGXXGXPSPPX 459
GP P G + P K G P P +P PPP + G G P PP
Sbjct: 108 GPAGPAGAPGNPGR--PGKPGAPGLPGNPGKPPVQPCEPITPPPCKPCPDGPAGPPGPP- 164
Query: 460 GGGAXXXXTXXXXGXKKXXAPP 525
G T G APP
Sbjct: 165 -GAPGDAGTNGAPGAPGGDAPP 185
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/64 (29%), Positives = 20/64 (31%)
Frame = +1
Query: 265 GPXKFXGPGXPQGEKKXXXKKIPXKXXXIGPPXXKRXXPXKPXXGXXPPPXQFFXGXXGX 444
GP + P PQG P GPP P P PP F G G
Sbjct: 94 GPPRGYPPPPPQGADTWRGAPPPAHHGHFGPPGHHFQGP--PQHFPPGPPRPHFPGPPGP 151
Query: 445 PSPP 456
PP
Sbjct: 152 HRPP 155
Score = 28.3 bits (60), Expect = 7.4
Identities = 20/77 (25%), Positives = 23/77 (29%)
Frame = +2
Query: 419 NFXPXXGGPPPPXKGGXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKKXFPXPPXX 598
N P G PPPP +G PP P F + FP PP
Sbjct: 92 NQGPPRGYPPPPPQGADTWRGAPPPAHHGHFGPPGHHFQGPPQHFPPGPPRPHFPGPPGP 151
Query: 599 XXXGGXXFXGPLPPXPP 649
+ GP P P
Sbjct: 152 HRP-PEHYPGPPRPQAP 167
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/58 (31%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Frame = +2
Query: 437 GGPPPPXKG------GXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKKXFPXPP 592
G PPPP G G PP K PPPP G P PP
Sbjct: 135 GSPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSTEGNASRRPPPP 192
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/58 (31%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Frame = +2
Query: 437 GGPPPPXKG------GXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKKXFPXPP 592
G PPPP G G PP K PPPP G P PP
Sbjct: 104 GTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSGEGNASRRPPPP 161
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Frame = +2
Query: 419 NFXPXXGG--PPPPXKGGXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKKXFPXPP 592
++ P GG PPPP +G G PP + PP + + +P PP
Sbjct: 670 HYGPPGGGQGPPPPPQGQQYYGGPPPPG---QPYGPPGGYPPQQQRPPYQA--QPYPGPP 724
Query: 593 XXXXXGGXXFXGPLPPXP 646
G + P PP P
Sbjct: 725 PPQQQRGYGY--PPPPQP 740
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Frame = +2
Query: 419 NFXPXXGG--PPPPXKGGXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKKXFPXPP 592
++ P GG PPPP +G G PP + PP + + +P PP
Sbjct: 670 HYGPPGGGQGPPPPPQGQQYYGGPPPPG---QPYGPPGGYPPQQQRPPYQA--QPYPGPP 724
Query: 593 XXXXXGGXXFXGPLPPXP 646
G + P PP P
Sbjct: 725 PPQQQRGYGY--PPPPQP 740
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/74 (28%), Positives = 24/74 (32%)
Frame = +2
Query: 428 PXXGGPPPPXKGGXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKKXFPXPPXXXXX 607
P G PPP +G PP PPPF G + F PP
Sbjct: 291 PPFGFFPPPPRG-----HFPPPPPHFMGRGMPPPFMPPPPHFGM-GPPRGFMPPPHPMMF 344
Query: 608 GGXXFXGPLPPXPP 649
G + PP PP
Sbjct: 345 RGGPYPPFFPPPPP 358
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/74 (28%), Positives = 24/74 (32%)
Frame = +2
Query: 428 PXXGGPPPPXKGGXXXGXXXPPXGXKKKXXPPPPFXXXSXXXXXXGXKKXFPXPPXXXXX 607
P G PPP +G PP PPPF G + F PP
Sbjct: 291 PPFGFFPPPPRG-----HFPPPPPHFMGRGMPPPFMPPPPHFGM-GPPRGFMPPPHPMMF 344
Query: 608 GGXXFXGPLPPXPP 649
G + PP PP
Sbjct: 345 RGGPYPPFFPPPPP 358
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,591,699
Number of Sequences: 27780
Number of extensions: 307206
Number of successful extensions: 1705
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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