Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_P17
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    81   3e-16
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        27   2.8  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    27   3.8  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   6.6  

>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 80.6 bits (190), Expect = 3e-16
 Identities = 37/81 (45%), Positives = 50/81 (61%)
 Frame = +1

Query: 217 LKTNWFTESCDMWPGGTFSFXVKEVLHTXKSKYQNIQVFDTTSLGKVLVLDGIIQCTXKD 396
           +K  WF E  +MWPG   +  VK+VL+  KSKYQ++ VF++ + G VLVLDG IQ T +D
Sbjct: 11  IKDGWFREINNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERD 70

Query: 397 XXSYHEXISXXPLCCHQKSRK 459
             SY E I+   L  H   +K
Sbjct: 71  EFSYQEMIAHLALNSHPNPKK 91



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +2

Query: 449 NPENVXIVGGGDXRVXXGTRXTSSPXHTLFLVXIXXXXLESSKRYLPXHXGXVXH 613
           NP+ V ++GGGD  V             + L  I    ++ SK+YLP       H
Sbjct: 88  NPKKVLVIGGGDGGVLREVVKHECVEEAI-LCDIDEDVIKVSKQYLPEMSAGFNH 141


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +1

Query: 250 MWPGGTFSFXVKEVLHTXKSKYQNIQVFDTTSLGKVLVLDGIIQCTXKD 396
           +W G  +   +K +L   K K  N+  FD   L  V+    +++ +  D
Sbjct: 55  LWDGHVWIGSLKNILIYLKQKGYNLDNFDAKQLANVMAFTSLLEGSVND 103


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 290 YCTQXNQNTRISKFLIQPVWGRSLSWTESYN 382
           +CTQ    + +SKF   P   RS+  TE+ N
Sbjct: 20  FCTQKLHRSTVSKFFEHPTSKRSIGVTENGN 50


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 371 PSKTRTFPKLVVSKTWIFWY 312
           PS+T    K  V KTW +W+
Sbjct: 815 PSRTLIIDKACVEKTWPYWW 834


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,215
Number of Sequences: 5004
Number of extensions: 40165
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)