Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_P14
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0426 + 20667639-20667938                                         31   1.2  
04_04_0603 + 26539104-26539148,26539941-26540046,26540465-265406...    31   1.5  
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    29   4.7  

>06_03_0426 + 20667639-20667938
          Length = 99

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -1

Query: 178 SRSWLEVSADSSTTPALAASMHIANTTRSFILLGAFQDRLQVCKSKS*G 32
           SR++L  S   S + A+AAS  +   +R   LL  +QDR Q+C+S   G
Sbjct: 50  SRTFLLWSLKVSRSYAMAASSAVLKVSRVVKLLRWWQDREQLCRSNGGG 98


>04_04_0603 +
           26539104-26539148,26539941-26540046,26540465-26540603,
           26540837-26540945,26541030-26541166,26541610-26541746,
           26542184-26542290,26542483-26542610,26543418-26543469
          Length = 319

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 28/113 (24%), Positives = 50/113 (44%)
 Frame = +3

Query: 381 LNFRLIMAGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENN 560
           L FRL+ A     I Y    +  K       +NE +   D +++ T+ V ++     E +
Sbjct: 18  LPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFLERGTDTVVFRTCPQ-ERD 76

Query: 561 RVYFKIHNTKYNQYLKMSTTTCNCHSRXRVVYGGNXADSHQGAMGSSHPAKYE 719
           RV F++  +   + LK +   CN  +   +  G   + S  G MG++  +K E
Sbjct: 77  RVVFQMGTSDAVRALKAAQLVCNDVAAIDINMGCPKSFSLSGGMGAALLSKPE 129


>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -1

Query: 304 LSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSST 140
           L+++ L+   W + P   L     + S      L  SP   +  SF S +    S D++T
Sbjct: 36  LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95

Query: 139 TPALAASMHIANTTR 95
            P   A+  +A TTR
Sbjct: 96  VPTTTAAARVAATTR 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,304,274
Number of Sequences: 37544
Number of extensions: 429422
Number of successful extensions: 1291
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)