Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_P12
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.68 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.68 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.2  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 796 PPPXPXXWXSPQTPPXPXPP 855
           PPP P  +  P  PP P PP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 796 PPPXPXXWXSPQTPPXPXPP 855
           PPP P     P + P P PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +1

Query: 787  PSVPPPXP--XXWXSPQTPPXPXPPXXXPLXRPTXPLXAXP 903
            PS+PPP P      SP + P    P   PL +P     A P
Sbjct: 967  PSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAP 1007



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
 Frame = +1

Query: 787  PSVPPPX---PXXWXSPQTPPXPXPPXXXPLXRPTXPLXAXP 903
            P VPPP    P    S   PP P P    P+  P+  L   P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
 Frame = +1

Query: 787 PSVP-PPXPXXWXSPQT--PPXPXPPXXXPLXRPTXPLXAXP 903
           PS P PP P     P T  PP P  P   P   P  P  A P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 787 PSVPPPXPXXWXSPQTPPXPXPPXXXPLXRPTXPLXAXP 903
           PS+PPP P       +   P P    P  +P  P+ + P
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -3

Query: 874 GXKGAXGGGXXXGGFGGNXRXXXGEXEXXGXRXWXRPTXRG 752
           G +G  GG    GGFGG  R   G     G R   R   RG
Sbjct: 149 GSRGGFGGNSR-GGFGGGSRGGFGGGSRGGSRGGFRGGSRG 188



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = -3

Query: 874 GXKGAXGGGXXXGGFGGNXRXXXGEXEXXGXRXWXRPTXRGXMEKXRHG 728
           G +G  GG    GGFGGN R   G     G     R   RG       G
Sbjct: 142 GFRGGRGGSR--GGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRG 188


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 787 PSVPPPXPXXWXSPQTPPXPXPPXXXPLXRPTXPLXAXP 903
           P++PP       S  TPP P PP   P   P+ P  A P
Sbjct: 401 PALPPLGNASRTS--TPPVPTPPSLPPSAPPSLPPSAPP 437


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 793 VPPPXPXXWXSPQTPPXPXPPXXXPLXRPTXP 888
           VPPP P     P  PP P      P   P  P
Sbjct: 751 VPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 787 PSVPPPXPXXWXSPQTPPXPXPP 855
           P  PPP P    +   PP P PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,541
Number of Sequences: 5004
Number of extensions: 38497
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)