Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_P12
(903 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical pr... 34 0.12
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 33 0.21
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 33 0.37
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 33 0.37
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 32 0.49
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 32 0.65
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 31 1.1
U40802-12|AAK19014.2| 265|Caenorhabditis elegans Sperm-specific... 31 1.5
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 30 2.6
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 30 2.6
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 30 2.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 3.4
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 3.4
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 3.4
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 3.4
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 3.4
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.5
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 4.5
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 4.5
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.5
U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific ... 29 6.0
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 6.0
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 29 6.0
Z70284-9|CAA94280.1| 290|Caenorhabditis elegans Hypothetical pr... 28 7.9
U64609-1|AAB04598.1| 405|Caenorhabditis elegans Sperm-specific ... 28 7.9
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 28 7.9
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 28 7.9
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 7.9
AF016416-2|AAB65274.2| 243|Caenorhabditis elegans Hypothetical ... 28 7.9
>Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical
protein T01C3.7 protein.
Length = 352
Score = 34.3 bits (75), Expect = 0.12
Identities = 28/82 (34%), Positives = 31/82 (37%)
Frame = -3
Query: 874 GXKGAXGGGXXXGGFGGNXRXXXGEXEXXGXRXWXRPTXRGXMEKXRHGXPXGXKRRDQV 695
G +G GGG GG+GG R G + G R RG R G G
Sbjct: 25 GSRGGFGGGGR-GGYGGGDRGSFGGGDRGGFRGGRGGGDRGGFRGGRGGGDRGGF----- 78
Query: 694 SR*AGRGSEPGXGXXGGSFPRG 629
GRGS P G G PRG
Sbjct: 79 ---GGRGS-PRGGFGGRGSPRG 96
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 33.5 bits (73), Expect = 0.21
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = -3
Query: 865 GAXGGGXXXGGFGG-NXRXXXGEXEXXGXRXWXRPTXRGXMEKXRHGXPXGXKRRDQVSR 689
GA GGG GG+GG G G R R + RG M G G R ++
Sbjct: 519 GAYGGGYG-GGYGGPGAYGDFGAYGGGGFRGGMRGSPRGGMGGGG-GFRGGPPGRGGMAN 576
Query: 688 *AGRGSEPGXGXXGGSFPR 632
GRG PG G G + R
Sbjct: 577 RRGRGKRPGDGRGGPASKR 595
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 32.7 bits (71), Expect = 0.37
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 787 PSVPPPXPXXWXSPQTPPXPXPPXXXPLXRPTXPLXAXP 903
P +PPP P +P P P PP P RP P+ A P
Sbjct: 73 PPLPPP-PLPLSNPPAKPTPPPPPPKPTIRP-PPIPASP 109
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 32.7 bits (71), Expect = 0.37
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 787 PSVPPPXPXXWXSPQTPPXPXPPXXXPLXRPTXPLXAXP 903
P +PPP P +P P P PP P RP P+ A P
Sbjct: 295 PPLPPP-PLPLSNPPAKPTPPPPPPKPTIRP-PPIPASP 331
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 32.3 bits (70), Expect = 0.49
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +1
Query: 787 PSVPPPXPXXWXSPQTPPXPXPPXXXPLXRPTXP 888
P PPP P Q PP P PP L P P
Sbjct: 68 PPPPPPPPLISILQQAPPPPPPPPPPTLKAPPPP 101
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 31.9 bits (69), Expect = 0.65
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 802 PXPXXWXSPQTPPXPXPPXXXPLXRPTXP 888
P P P PP P PP P+ RP+ P
Sbjct: 66 PPPPICPPPPPPPMPCPPPPPPMPRPSCP 94
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 869 KGXXXGGXGXGGVWGEXQXXGWGGGTXG 786
+G GG G GG G GWGGG G
Sbjct: 212 RGGSGGGGGGGGGGGYGSGGGWGGGGGG 239
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Frame = -2
Query: 887 GXVGRXKGXXXGGXGXGGVWG------EXQXXGWGGGTXG 786
G G G GG G GG WG + GWGGG G
Sbjct: 214 GSGGGGGGGGGGGYGSGGGWGGGGGGRDRDRGGWGGGGGG 253
>U40802-12|AAK19014.2| 265|Caenorhabditis elegans Sperm-specific
family, class qprotein 3 protein.
Length = 265
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -2
Query: 887 GXVGRXKGXXXGGXGXGGVWGEXQXXGWGGGTXGXXXXXKTYXA 756
G VG G G G GG+ G+ G GGG G Y A
Sbjct: 220 GPVGGGGGGAKSGGGGGGIPGQSVYMGAGGGGGGGGGATSAYFA 263
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 796 PPPXPXXWXSPQTPPXPXPP 855
PPP P PQ PP P PP
Sbjct: 202 PPPVPLTSNIPQAPPAPPPP 221
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 796 PPPXPXXWXSPQTPPXPXPP 855
PPP P PQ PP P PP
Sbjct: 188 PPPVPLTSNIPQAPPAPPPP 207
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 796 PPPXPXXWXSPQTPPXPXPP 855
PPP P PQ PP P PP
Sbjct: 188 PPPVPLTSNIPQAPPAPPPP 207
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +1
Query: 790 SVPPPXPXXWXSPQTPPXPXPPXXXPLXRPTXPLXAXP 903
S PPP P P+TPP PP P P P P
Sbjct: 136 SSPPPPPPP-RVPRTPPPRSPPPRRPPMTPPSPQRRPP 172
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 787 PSVPPPXPXXWXSPQTPPXPXPP 855
P PP P P+TPP P PP
Sbjct: 171 PPRTPPSPEPRNPPRTPPSPIPP 193
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +1
Query: 787 PSVPPPXPXXWXSPQTPPXPXPPXXXPLXRPTXPLXAXP 903
P PPP P +P P P PP P P P+ P
Sbjct: 28 PPCPPPPPPM-CAPPPLPCPPPPICPPQFCPPPPMCPPP 65
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.5 bits (63), Expect = 3.4
Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Frame = -3
Query: 889 GXRLXGXKGAXGG--GXXXGGFGGNXRXXXGEXEXXGXRXWXRPTXR--GXMEKXRHGXP 722
G G GA GG G GG+GG+ G+ G W P + G + G
Sbjct: 231 GPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGG 290
Query: 721 XGXKRRDQVSR*AGRGSEPGXGXXGGSFPRGETPG 617
G Q + G G G GG +G+ G
Sbjct: 291 QGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQG 325
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.5 bits (63), Expect = 3.4
Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Frame = -3
Query: 889 GXRLXGXKGAXGG--GXXXGGFGGNXRXXXGEXEXXGXRXWXRPTXR--GXMEKXRHGXP 722
G G GA GG G GG+GG+ G+ G W P + G + G
Sbjct: 193 GPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGG 252
Query: 721 XGXKRRDQVSR*AGRGSEPGXGXXGGSFPRGETPG 617
G Q + G G G GG +G+ G
Sbjct: 253 QGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQG 287
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.5 bits (63), Expect = 3.4
Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Frame = -3
Query: 889 GXRLXGXKGAXGG--GXXXGGFGGNXRXXXGEXEXXGXRXWXRPTXR--GXMEKXRHGXP 722
G G GA GG G GG+GG+ G+ G W P + G + G
Sbjct: 231 GPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGG 290
Query: 721 XGXKRRDQVSR*AGRGSEPGXGXXGGSFPRGETPG 617
G Q + G G G GG +G+ G
Sbjct: 291 QGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQG 325
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 902 GXAXRGXVGRXKGXXXGGXGXGGVWGEXQXXGWGGGTXG 786
G + G G +G GG G GG G+ GWGG G
Sbjct: 141 GNSNAGGWGGSQGGQNGGGGRGGSGGQG---GWGGSQDG 176
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 787 PSVPPPXPXXWXSPQTPPXPXPPXXXPLXRPTXP 888
P VPPP P +P PP P P P RP P
Sbjct: 261 PPVPPPPPSV--TPMPPPMPPTPGMTP--RPPPP 290
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 787 PSVPPPXPXXWXSPQTPPXPXPPXXXPLXRPTXP 888
P VPPP P +P PP P P P RP P
Sbjct: 271 PPVPPPPPSV--TPMPPPMPPTPGMTP--RPPPP 300
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -2
Query: 887 GXVGRXKGXXXGGXGXGGVWGEXQXXGWGGG 795
G G G GG G G WG GWG G
Sbjct: 30 GRWGGWGGNRWGGGGGPGGWGNNGGGGWGRG 60
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Frame = -2
Query: 854 GGXGXGGVWGEXQXXGWGGGTXGXXXXXKTYXAXXXGKKXP--RXPRRGEEAGPGIPVSG 681
G G G G G G + G KT A G P + R G + PG P G
Sbjct: 155 GLPGAPGQPGSNGGAGSNGASEGSAGGCKTCPAGPPGPPGPAGQAGRPGNDGQPGAPSFG 214
Query: 680 QGVG 669
GVG
Sbjct: 215 GGVG 218
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 787 PSVPPPXPXXWXSPQTPPXPXPP 855
P PPP P +P PP P PP
Sbjct: 1341 PPPPPPPPSDDLTPVPPPPPPPP 1363
>U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific
family, class qprotein 4 protein.
Length = 373
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 887 GXVGRXKGXXXGGXGXGGVWGEXQXXGWGGGTXG 786
G VG G G G GG+ G+ G GGG G
Sbjct: 326 GPVGGGGGGAKSGGGGGGIPGQSVYMGAGGGGGG 359
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -2
Query: 878 GRXKGXXXGGXGXGGVWGEXQXXG-WGGGTXG 786
GR G G G GG WG G WGG G
Sbjct: 56 GRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGG 87
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 878 GRXKGXXXGGXGXGGVWGEXQXXGWGGGTXG 786
G +G G G GG WG G GGG G
Sbjct: 65 GGGRGGGWGNNGGGGNWGGNGGGGNGGGGRG 95
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -3
Query: 874 GXKGAXGGGXXXGGFGGNXRXXXGEXEXXGXR 779
G +G GGG GG GG R G G R
Sbjct: 102 GGRGGGGGGRGGGGGGGGGRGGGGGGRGGGGR 133
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 796 PPPXPXXWXSPQTPPXPXPP 855
PPP P +P PP P PP
Sbjct: 41 PPPPPMCGCAPPPPPPPPPP 60
>Z70284-9|CAA94280.1| 290|Caenorhabditis elegans Hypothetical
protein K07F5.11 protein.
Length = 290
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = -2
Query: 878 GRXKGXXXGGXGXGGVWGEXQXXGWGGGTXGXXXXXKTYXA 756
G G GG G GG+ G+ G GGG Y A
Sbjct: 248 GAAGGAKSGGGGGGGIPGQSMYMGAGGGGGAGGGATSAYFA 288
>U64609-1|AAB04598.1| 405|Caenorhabditis elegans Sperm-specific
family, class qprotein 2 protein.
Length = 405
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = -2
Query: 878 GRXKGXXXGGXGXGGVWGEXQXXGWGGGTXGXXXXXKTYXA 756
G G GG G GG+ G+ G GGG Y A
Sbjct: 363 GAAGGAKTGGGGGGGIPGQSMYMGAGGGGGAGGGATSAYFA 403
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +1
Query: 787 PSVPPPXPXXWXSPQTPPXPXPPXXXP 867
P PPP P PP P PP P
Sbjct: 496 PPPPPPLPPIATPSSVPPPPPPPPPPP 522
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 28.3 bits (60), Expect = 7.9
Identities = 24/88 (27%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Frame = -3
Query: 874 GXKGAXGGGXXXGGFGGNXRXXXGEXEXXGXRXWXRPTXR--GXMEKXRHGXPXGXKRRD 701
G G GGG G GGN G+ G W P + G + G G
Sbjct: 201 GAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGP 260
Query: 700 QVSR*AGRGSEPGXGXXGGSFPRGETPG 617
Q + G G G GG +G+ G
Sbjct: 261 QQQQQGGWGGPQQGGGGGGWGGQGQQQG 288
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.3 bits (60), Expect = 7.9
Identities = 24/88 (27%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Frame = -3
Query: 874 GXKGAXGGGXXXGGFGGNXRXXXGEXEXXGXRXWXRPTXR--GXMEKXRHGXPXGXKRRD 701
G G GGG G GGN G+ G W P + G + G G
Sbjct: 239 GAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGP 298
Query: 700 QVSR*AGRGSEPGXGXXGGSFPRGETPG 617
Q + G G G GG +G+ G
Sbjct: 299 QQQQQGGWGGPQQGGGGGGWGGQGQQQG 326
>AF016416-2|AAB65274.2| 243|Caenorhabditis elegans Hypothetical
protein F29A7.4 protein.
Length = 243
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/67 (22%), Positives = 26/67 (38%)
Frame = -2
Query: 620 WYXYSPCRVSATXDXSVDFXDXXAGGAEPXEXRQQRGPFYGSWPFAGXXLTXSFLRYPLI 441
W V T + + G + +++ G F G+W AG ++ R+PLI
Sbjct: 128 WSADQTYSVKVTTKPATEVTRINVNGNDLEVTKEKIGVFSGNWNTAGAEISKRGTRHPLI 187
Query: 440 LWITVLP 420
+ P
Sbjct: 188 FLVNFAP 194
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,544,026
Number of Sequences: 27780
Number of extensions: 261051
Number of successful extensions: 1860
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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