Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_P11
(941 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.8
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 6.7
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 6.7
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 26 6.7
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 6.7
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 26 8.8
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 552 PPXPXXPPXPAPLXPRXPPXPXP 620
PP P PP PA P PP P P
Sbjct: 1715 PPPPSAPPMPAG-PPSAPPPPLP 1736
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 552 PPXPXXPPXPAPLXPRXPPXPXP 620
PP P PP A P PP P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/48 (27%), Positives = 14/48 (29%)
Frame = +3
Query: 570 PPXPAPLXPRXPPXPXPXXXXXXXXXXXXXXXXXXXXXXXXXXPPPPP 713
PP PA + P P P P PPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 555 PXPXXPPXPAPLXPRXPPXPXP 620
P P P PAP+ PP P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPP 767
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/45 (33%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Frame = +1
Query: 487 PPPPPPXXXXXXXXXXXXXXXXXXXPXXPPXPPXSXPA-XXPXPP 618
PPPPPP PP PP S A P PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +1
Query: 490 PPPPPXXXXXXXXXXXXXXXXXXXPXXPPXPPXSXPAXXPXPP 618
PPPPP P PP PP S P+ PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAP--PPPPPRSAPSTGRQPP 377
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 561 PXXPPXPAPLXPRXPPXP 614
P P PAPL P PP P
Sbjct: 802 PFKAPPPAPLPPPAPPLP 819
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = -2
Query: 280 HCGTSHGPTWS---TKSWTSGFSQSGSAI 203
+ GT H P+WS + +W +G S G AI
Sbjct: 45 YIGTRHNPSWSHPYSVTWLNGSSYYGLAI 73
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 183 NVHLSGIFSLENVAR*RNRQLPQ 115
N+H+SGI +LENV + QL Q
Sbjct: 103 NLHMSGIENLENVLLEQKEQLQQ 125
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 6.7
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -3
Query: 243 NRGLRDSHSPARPFEGNTELNVHLSGIFSLENVAR*RNRQLPQQTTNTNK-TFHC*RSLS 67
++GL +S SP PF + N H S ++ + + LP T NK +F SL
Sbjct: 526 SKGLLNSFSPISPFSKSKSHNHHPSSQVE-KSTSNSKGSMLPLDTLYNNKLSFRLDESL- 583
Query: 66 QMQELMIKILRNSL 25
++ L ++++ SL
Sbjct: 584 -VRYLRFELMKTSL 596
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -3
Query: 249 QRNRGLRDSHSPARPFEGNTELNVHLSGIFSLENVAR*RNRQLPQQTTNTNKT 91
++NR + ++ P+ F GN +L SG ++ + + ++ ++ N NKT
Sbjct: 41 RKNRKKKKNNGPSEQFVGNNDLEEQRSGSIDSKDKEKPLDEKV-KELENANKT 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,526
Number of Sequences: 5004
Number of extensions: 42285
Number of successful extensions: 254
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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