Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_P09
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.29 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    30   0.51 
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.67 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc...    26   6.3  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   6.3  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   6.3  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   8.3  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +2

Query: 617  GVSPWKPPSCASPVPTLPLTGIPVRP 694
            GV P  PPS A PVPT P  G+P  P
Sbjct: 1206 GVPPVPPPSTAPPVPT-PSAGLPPVP 1230



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 21/73 (28%), Positives = 31/73 (42%)
 Frame = +2

Query: 617  GVSPWKPPSCASPVPTLPLTGIPVRPSSPSGNXAXSHXPXPVXISLPGVRSLRXQAXACV 796
            GV P  PPS A PVP  P  G+P  P   +     +       + +P  ++    A +  
Sbjct: 1187 GVPPVPPPSEAPPVPK-PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSE 1245

Query: 797  AQPPXFNPRTAAP 835
            A P    PR++ P
Sbjct: 1246 A-PSVSTPRSSVP 1257



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 33/104 (31%), Positives = 39/104 (37%), Gaps = 1/104 (0%)
 Frame = +2

Query: 575  KSEVAKPDRTIXIP-GVSPWKPPSCASPVPTLPLTGIPVRPSSPSGNXAXSHXPXPVXIS 751
            K  VA P   +  P G  P   PS A+P    P +GIP  P   +G       P P    
Sbjct: 1144 KPSVAAPP--VPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAG-----VPPVPPPSE 1196

Query: 752  LPGVRSLRXQAXACVAQPPXFNPRTAAPLSGTXXP*VPPRXNPT 883
             P V          V  PP   P TA P+  T    +PP   PT
Sbjct: 1197 APPV------PKPSVGVPPVPPPSTAPPVP-TPSAGLPPVPVPT 1233


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 542 PPERASQKSTLKSEVAKPDRTIXIPGVSPWKPPSCASP-VPTLPLTGIPVRPSSPSGNXA 718
           PP     +ST  S++  P R +   G     PP  A+P  P  P T    R +  S + A
Sbjct: 242 PPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPPTNASTRSTGTSSSMA 301

Query: 719 XSHXPXP 739
            S+   P
Sbjct: 302 HSYDSPP 308


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 563 KSTLKSEVAKPDRTIXIPGVS-PWKPPSCASPVPTLPLTGIPVRPSSP 703
           K+   SE +KP     +P    P +PP    PVP  PL G P  P  P
Sbjct: 82  KNEPTSEASKPLLNELVPEEPLPREPPLPNEPVPEEPLPGEPPLPDEP 129



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 626 PWKPPSCASPVPTLPLTGIPVRPSSP 703
           P +PP    PVP  PL G P  P+ P
Sbjct: 120 PGEPPLPDEPVPEEPLPGEPPLPNEP 145


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 659  PTLPLTGIPVRPSSPSGNXAXSHXPXPVXISLPGVRSLRXQAXACVAQPPXFNPRTAAP 835
            P  P++  PVRP S +     +  P P  +S+P   S         + PP   P ++AP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
 Frame = +2

Query: 593  PDRTIXIPGVSPWK--PPSCASPVPTLPLTGIPVRPSSPSGNXAXSHXPXP 739
            P   +  P V P    PP  ++P P  P   +P  PS+P         P P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +2

Query: 614 PGVSPWKPPSC-ASPVPTLPLTGIPVRPSSPSGNXAXSHXPXPVXISLPGVRSLRXQAXA 790
           P + P  PPS   S  P+LP+ G P  P  P      +    P+   +P    L     A
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPM-GAPAAPPLPPS----APIAPPLPAGMPAAPPL---PPA 472

Query: 791 CVAQPPXFNPRTAAPLS 841
             A PP   P  AAP++
Sbjct: 473 APAPPPAPAPAPAAPVA 489


>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 167

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 659 PTLPLTGIPVRPS-SPSGNXAXSHXPXP 739
           PTLPL  +PVR S S S +   S  P P
Sbjct: 19  PTLPLYNVPVRRSISSSSSIPPSSSPPP 46


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 27/106 (25%), Positives = 37/106 (34%), Gaps = 5/106 (4%)
 Frame = +2

Query: 566  STLKSEVAKPDRTIXIPGVSPWKPPSCASPVPTLPLTGIPVRPSSPSGNXAXSHXPXPV- 742
            S L ++ A P      P   P   P  A+P   LP  G P   ++ SGN      P P+ 
Sbjct: 1874 SDLSNQAAPPPPP---PMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMP-APVPLT 1929

Query: 743  ----XISLPGVRSLRXQAXACVAQPPXFNPRTAAPLSGTXXP*VPP 868
                 + L  + +      +    PP  N R   PL        PP
Sbjct: 1930 GKETAVPLSSMPNAPPSVASNAKLPPASNNRKVDPLEDILQAMPPP 1975


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 632 KPPSCASPVPTLPLTGIPVRPSSPSGNXAXSHXPXPVXIS 751
           +PPS A    T P T +P+ P +   + A S  P    +S
Sbjct: 703 EPPSSALVSATSPTTNVPIVPEAVHLSTAFSTAPVSTIVS 742


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +3

Query: 546 LNEHHKNXRSSQRWRNPTGLXRYQAF----PPGSLPRAPLLFXPCRLPGY 683
           L ++HKN +S+     P GL  Y+A     PPG + +        +L GY
Sbjct: 387 LQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPG-IGKTTAAHLVAKLEGY 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,697
Number of Sequences: 5004
Number of extensions: 54444
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)