Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_P08
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378... 116 3e-26
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63... 116 3e-26
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161... 114 8e-26
07_03_1310 - 25673140-25673418,25673837-25674082,25674189-256744... 31 1.2
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786... 30 2.8
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616... 28 8.5
05_02_0082 - 6447848-6448103,6448464-6448591 28 8.5
>02_05_1204 +
34936696-34936698,34936809-34936944,34937794-34937895,
34938153-34938199
Length = 95
Score = 116 bits (278), Expect = 3e-26
Identities = 49/64 (76%), Positives = 55/64 (85%)
Frame = +1
Query: 115 MTKGTSSFGKRRNKTHTLCRXCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTG 294
M KGT SFGKRRNKTHTLC CGR S+H+QKS C+ CGYPAA++R Y+WSVKA RRKTTG
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 295 TGRM 306
TGRM
Sbjct: 61 TGRM 64
>02_01_0089 +
633642-633644,633728-633863,635356-635457,635565-635608
Length = 94
Score = 116 bits (278), Expect = 3e-26
Identities = 49/64 (76%), Positives = 55/64 (85%)
Frame = +1
Query: 115 MTKGTSSFGKRRNKTHTLCRXCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTG 294
M KGT SFGKRRNKTHTLC CGR S+H+QKS C+ CGYPAA++R Y+WSVKA RRKTTG
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 295 TGRM 306
TGRM
Sbjct: 61 TGRM 64
>08_01_0195 +
1612938-1613003,1613026-1613161,1614624-1614725,
1614833-1614876
Length = 115
Score = 114 bits (275), Expect = 8e-26
Identities = 48/62 (77%), Positives = 54/62 (87%)
Frame = +1
Query: 121 KGTSSFGKRRNKTHTLCRXCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTG 300
KGT SFGKRRNKTHTLC CGR S+H+QKS C+ CGYPAA++R Y+WSVKA RRKTTGTG
Sbjct: 24 KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTG 83
Query: 301 RM 306
RM
Sbjct: 84 RM 85
>07_03_1310 -
25673140-25673418,25673837-25674082,25674189-25674465,
25675474-25675751,25675845-25676378
Length = 537
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 269 RLSAGRLLELAXCCHLKIVRRRFRNGFKEGKPTPP 373
RL+A + LELA ++ RRR R+G P PP
Sbjct: 500 RLNASQSLELAFIIAERLRRRRMRSGVNSNLPLPP 534
>01_06_0358 - 28677781-28677901,28678327-28678430,28678542-28678625,
28679221-28679265,28679523-28679594,28679721-28679759,
28679966-28680061,28680492-28680566,28681717-28681764,
28681888-28681971,28682141-28682341,28682394-28682561,
28683232-28683372,28683470-28683517,28683845-28684087,
28684184-28684297,28685134-28685163,28685361-28685951,
28686033-28686620,28686744-28686863,28687764-28687938,
28688397-28688562,28688653-28688755,28689227-28689319,
28690759-28690918,28691754-28691872
Length = 1275
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 358 PFFKTITEAPPDNLQMTAXGQFQ*SSCA*PSLTSGRIVILLQDIH 224
P F + + PPD Q Q S+ P+LT ++I + DI+
Sbjct: 1067 PIFPRLVDLPPDRFQDALARILQGSAHTGPALTPAEVLIAIHDIN 1111
>10_08_0343 -
16960764-16960895,16961166-16961171,16961272-16961640,
16962118-16962304,16962567-16962759,16962864-16963137,
16963215-16963374,16963985-16964199,16964784-16964876,
16965192-16965260,16965293-16965445,16965534-16965737,
16966416-16966691,16967336-16967431,16967585-16967788,
16967877-16968069,16968229-16968374,16968771-16969425,
16971462-16971774,16971989-16972139,16972602-16973815,
16973933-16974182,16974784-16975035
Length = 1934
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -1
Query: 820 AXXPAGGREPGXRESVGGRXXX-GGPNTXTGFXRGGXGFXKG 698
A P R GGR GGPN+ G RGG G +G
Sbjct: 837 ALAPVSASAMSYRGGGGGRRGGGGGPNSQRGRGRGGGGAGRG 878
>05_02_0082 - 6447848-6448103,6448464-6448591
Length = 127
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = -1
Query: 874 GWWXXETGXXXPXEXRGXAXXPAGGREPGXRESVGGRXXXGGPNTXTG 731
GW + G P G A GG E ESV GR TG
Sbjct: 76 GWPAGDGGRGGPPRGGGSAGGEGGGVEETAEESVEGRESSAAKGDTTG 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,588,697
Number of Sequences: 37544
Number of extensions: 269636
Number of successful extensions: 579
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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